function h5ex_d_checksum %************************************************************************** % % This example shows how to read and write data to a dataset % using the Fletcher32 checksum filter. The program first % checks if the Fletcher32 filter is available, then if it % is it writes integers to a dataset using Fletcher32, then % closes the file. Next, it reopens the file, reads back % the data, checks if the filter detected an error and % outputs the type of filter and the maximum value in the % dataset to the screen. % % This file is intended for use with HDF5 Library version 1.8 %************************************************************************** fileName = 'h5ex_d_checksum.h5'; DATASET = 'DS1'; DIM0 = 32; DIM1 = 64; CHUNK0 = 4; CHUNK1 = 8; dims = [DIM0, DIM1]; chunk = [CHUNK0, CHUNK1]; wdata = int32(zeros(DIM0,DIM1)); % Write buffer % % % Check if the Fletcher32 filter is available and can be used for % both encoding and decoding. Normally we do not perform error % checking in these examples for the sake of clarity, but in this % case we will make an exception because this filter is an % optional part of the hdf5 library. % avail = H5Z.filter_avail('H5Z_FILTER_FLETCHER32'); if (~avail) fprintf ('N-Bit filter not available.\n'); return; end filter_info = H5Z.get_filter_info ('H5Z_FILTER_FLETCHER32'); if ( ~(filter_info && H5ML.get_constant_value('H5Z_FILTER_CONFIG_ENCODE_ENABLED')) || ... ~(filter_info && H5ML.get_constant_value('H5Z_FILTER_CONFIG_DECODE_ENABLED')) ) fprintf ('N-Bit filter not available for encoding and decoding.\n'); return; end % % Initialize data. % for i=1:DIM0 for j=1:DIM1 ii=i-1; jj=j-1; wdata(i,j) = ii * jj - jj; end end % %% Create a new file using the default properties. % file = H5F.create (fileName, 'H5F_ACC_TRUNC', 'H5P_DEFAULT', 'H5P_DEFAULT'); % % Create dataspace. Setting maximum size to [] sets the maximum % size to be the current size. % space = H5S.create_simple (2,fliplr( dims), []); % % Create the dataset creation property list, add the N-Bit filter % and set the chunk size. % dcpl = H5P.create ('H5P_DATASET_CREATE'); H5P.set_fletcher32 (dcpl); H5P.set_chunk (dcpl, fliplr(chunk)); % % Create the dataset. % dset = H5D.create (file, DATASET, 'H5T_STD_I32LE', space, dcpl); % % Write the data to the dataset. % H5D.write (dset, 'H5T_NATIVE_INT', 'H5S_ALL', 'H5S_ALL', 'H5P_DEFAULT',wdata); % % Close and release resources. % H5P.close (dcpl); H5D.close (dset); H5S.close (space); H5F.close (file); % %% Now we begin the read section of this example. % % % Open file and dataset using the default properties. % file = H5F.open (fileName, 'H5F_ACC_RDONLY', 'H5P_DEFAULT'); dset = H5D.open (file, DATASET); % % Retrieve dataset creation property list. % dcpl = H5D.get_create_plist (dset); % % Retrieve and print the filter type. Here we only retrieve the % first filter because we know that we only added one filter. % filter_type = H5P.get_filter (dcpl, 0); fprintf ('Filter type is: '); switch (filter_type) case H5ML.get_constant_value('H5Z_FILTER_DEFLATE') fprintf ('H5Z_FILTER_DEFLATE\n'); case H5ML.get_constant_value('H5Z_FILTER_SHUFFLE') fprintf ('H5Z_FILTER_SHUFFLE\n'); case H5ML.get_constant_value('H5Z_FILTER_FLETCHER32') fprintf ('H5Z_FILTER_FLETCHER32\n'); case H5ML.get_constant_value('H5Z_FILTER_SZIP') fprintf ('H5Z_FILTER_SZIP\n'); otherwise fprintf ('Unknown filer returned\n'); end % % Read the data using the default properties. % try rdata = H5D.read (dset, 'H5T_NATIVE_INT', 'H5S_ALL', 'H5S_ALL', 'H5P_DEFAULT'); catch all %#ok % % Check if the read was successful. Normally we do not perform % error checking in these examples for the sake of clarity, but in % this case we will make an exception because this is how the % fletcher32 checksum filter reports data errors. % warning ('h5ex_d_checksum:DatasetRead','Dataset read failed~\n'); H5P.close (dcpl); H5D.close (dset); H5F.close (file); return; end % % Find the maximum value in the dataset, to verify that it was % read correctly. % maxData=max(rdata(:)); % % Print the maximum value. % fprintf ('Maximum value in %s is: %d\n', DATASET, maxData); % % Close and release resources. % H5P.close (dcpl); H5D.close (dset); H5F.close (file);