""" This example shows how to read and write string datatypes to a dataset. The program first writes strings to a dataset with a dataspace of DIM0, then closes the file. Next, it reopens the file, reads back the data, and outputs it to the screen. """ import sys import numpy as np import h5py FILE = "h5ex_t_stringatt.h5" DATASET = "DS1" ATTRIBUTE = "A1" # Strings are handled very differently between python2 and python3. if sys.hexversion >= 0x03000000: FILE = FILE.encode() DATASET = DATASET.encode() ATTRIBUTE = ATTRIBUTE.encode() DIM0 = 4 SDIM = 8 def run(): npdtype = '|S' + str(SDIM) wdata = np.empty((4,), npdtype) wdata[0] = "Parting" wdata[1] = "is such" wdata[2] = "sweet" wdata[3] = "sorrow" # Create a new file using the default properties. fid = h5py.h5f.create(FILE) # Create the file and memory datatypes. For this example we will save the # strings as FORTRAN strings, therefore they do not need space for the null # terminator in the file. filetype = h5py.h5t.FORTRAN_S1.copy() filetype.set_size(SDIM-1) memtype = h5py.h5t.C_S1.copy() memtype.set_size(SDIM) # Create a dataset with a scalar dataspace. # The origin C example uses a NULL dataspace, but this does not seem to # yet be possible in H5PY. space = h5py.h5s.create(h5py.h5s.SCALAR) dset = h5py.h5d.create(fid, DATASET, h5py.h5t.STD_I32LE, space) # Create the attribute dataspace. space = h5py.h5s.create_simple((DIM0,)) # Create the attribute and write the string data to it. attr = h5py.h5a.create(dset, ATTRIBUTE, filetype, space) attr.write(wdata) # Explicitly close and release resources. del attr del space del dset del fid # Open file and dataset using the default properties. fid = h5py.h5f.open(FILE) dset = h5py.h5d.open(fid, DATASET) attr = h5py.h5a.open(dset, ATTRIBUTE) # Get the dataspace and allocate an array big enough to accomodate it. space = attr.get_space() dims = space.get_simple_extent_dims() rdata = np.empty(dims, dtype=npdtype) attr.read(rdata) # Output the data to the screen. print("%s:" % ATTRIBUTE) print(rdata) if __name__ == "__main__": run()