001/*****************************************************************************
002 * Copyright by The HDF Group.                                               *
003 * Copyright by the Board of Trustees of the University of Illinois.         *
004 * All rights reserved.                                                      *
005 *                                                                           *
006 * This file is part of the HDF Java Products distribution.                  *
007 * The full copyright notice, including terms governing use, modification,   *
008 * and redistribution, is contained in the files COPYING and Copyright.html. *
009 * COPYING can be found at the root of the source code distribution tree.    *
010 * Or, see https://support.hdfgroup.org/products/licenses.html               *
011 * If you do not have access to either file, you may request a copy from     *
012 * help@hdfgroup.org.                                                        *
013 ****************************************************************************/
014
015package hdf.object;
016
017import java.util.Iterator;
018import java.util.LinkedList;
019import java.util.List;
020import java.util.Queue;
021import java.util.Stack;
022import java.util.Vector;
023
024/**
025 * Group is an abstract class. Current implementing classes are the H4Group and
026 * H5Group. This class includes general information of a group object such as
027 * members of a group and common operations on groups.
028 * <p>
029 * Members of a group may include other groups, datasets or links.
030 *
031 * @version 1.1 9/4/2007
032 * @author Peter X. Cao
033 */
034public abstract class Group extends HObject implements MetaDataContainer {
035
036    private static final long serialVersionUID = 3913174542591568052L;
037
038    /**
039     * The list of members (Groups and Datasets) of this group in memory.
040     */
041    private List<HObject> memberList;
042
043    /**
044     * The parent group where this group is located. The parent of the root
045     * group is null.
046     */
047    protected Group parent;
048
049    /**
050     * Total number of members of this group in file.
051     */
052    protected int nMembersInFile;
053
054    public static final int LINK_TYPE_HARD = 0;
055
056    public static final int LINK_TYPE_SOFT = 1;
057
058    public static final int LINK_TYPE_EXTERNAL = 64;
059
060    public static final int CRT_ORDER_TRACKED = 1;
061
062    public static final int CRT_ORDER_INDEXED = 2;
063
064
065    /**
066     * Constructs an instance of the group with specific name, path and parent
067     * group. An HDF data object must have a name. The path is the group path
068     * starting from the root. The parent group is the group where this group is
069     * located.
070     * <p>
071     * For example, in H5Group(h5file, "grp", "/groups/", pgroup), "grp" is the
072     * name of the group, "/groups/" is the group path of the group, and pgroup
073     * is the group where "grp" is located.
074     *
075     * @param theFile
076     *            the file containing the group.
077     * @param grpName
078     *            the name of this group, e.g. "grp01".
079     * @param grpPath
080     *            the full path of this group, e.g. "/groups/".
081     * @param grpParent
082     *            the parent of this group.
083     */
084    public Group(FileFormat theFile, String grpName, String grpPath, Group grpParent) {
085        this(theFile, grpName, grpPath, grpParent, null);
086    }
087
088    /**
089     * @deprecated Not for public use in the future.<br>
090     *             Using {@link #Group(FileFormat, String, String, Group)}
091     *
092     * @param theFile
093     *            the file containing the group.
094     * @param grpName
095     *            the name of this group, e.g. "grp01".
096     * @param grpPath
097     *            the full path of this group, e.g. "/groups/".
098     * @param grpParent
099     *            the parent of this group.
100     * @param oid
101     *            the oid of this group.
102     */
103    @Deprecated
104    public Group(FileFormat theFile, String grpName, String grpPath, Group grpParent, long[] oid) {
105        super(theFile, grpName, grpPath, oid);
106
107        this.parent = grpParent;
108    }
109
110    /**
111     * Clears up member list and other resources in memory for the group. Since
112     * the destructor will clear memory space, the function is usually not
113     * needed.
114     */
115    public void clear() {
116        if (memberList != null) {
117            ((Vector<HObject>) memberList).setSize(0);
118        }
119    }
120
121    /**
122     * Adds an object to the member list of this group in memory.
123     *
124     * @param object
125     *            the HObject to be added to the member list.
126     */
127    public void addToMemberList(HObject object) {
128        if (memberList == null) {
129            int size = Math.min(getNumberOfMembersInFile(), this
130                    .getFileFormat().getMaxMembers());
131            memberList = new Vector<HObject>(size + 5);
132        }
133
134        if ((object != null) && !memberList.contains(object)) {
135            memberList.add(object);
136        }
137    }
138
139    /**
140     * Removes an object from the member list of this group in memory.
141     *
142     * @param object
143     *            the HObject (Group or Dataset) to be removed from the member
144     *            list.
145     */
146    public void removeFromMemberList(HObject object) {
147        if (memberList != null) {
148            memberList.remove(object);
149        }
150    }
151
152    /**
153     * Returns the list of members of this group. The list is an java.util.List
154     * containing HObjects.
155     *
156     * @return the list of members of this group.
157     */
158    public List<HObject> getMemberList() {
159        FileFormat theFile = this.getFileFormat();
160
161        if ((memberList == null) && (theFile != null)) {
162            int size = Math.min(getNumberOfMembersInFile(), this
163                    .getFileFormat().getMaxMembers());
164            memberList = new Vector<HObject>(size + 5); // avoid infinite loop search for groups without members
165
166            // find the memberList from the file by checking the group path and
167            // name. group may be created out of the structure tree
168            // (H4/5File.loadTree()).
169            try {
170                theFile.open();
171            } // load the file structure;
172            catch (Exception ex) {
173                ;
174            }
175
176            HObject root = theFile.getRootObject();
177            if (root == null) return memberList;
178
179            Iterator<HObject> it = ((Group) root).depthFirstMemberList().iterator();
180            Group g = null;
181            Object uObj = null;
182            while (it.hasNext()) {
183                uObj = it.next();
184
185                if (uObj instanceof Group) {
186                    g = (Group) uObj;
187                    if (g.getPath() != null) // add this check to get rid of null exception
188                    {
189                        if ((this.isRoot() && g.isRoot())
190                                || (this.getPath().equals(g.getPath()) &&
191                                        g.getName().endsWith(this.getName()))) {
192                            memberList = g.getMemberList();
193                            break;
194                        }
195                    }
196                }
197            }
198        }
199
200        return memberList;
201    }
202
203    /**
204     * @return the members of this Group in breadth-first order.
205     */
206    public List<HObject> breadthFirstMemberList() {
207        Vector<HObject> members = new Vector<HObject>();
208        Queue<HObject> queue = new LinkedList<HObject>();
209        HObject currentObj = this;
210
211        queue.addAll(((Group) currentObj).getMemberList());
212
213        while(!queue.isEmpty()) {
214            currentObj = queue.remove();
215            members.add(currentObj);
216
217            if(currentObj instanceof Group && ((Group) currentObj).getNumberOfMembersInFile() > 0) {
218                queue.addAll(((Group) currentObj).getMemberList());
219            }
220        }
221
222        return members;
223    }
224
225    /**
226     * @return the members of this Group in depth-first order.
227     */
228    public List<HObject> depthFirstMemberList() {
229        Vector<HObject> members = new Vector<HObject>();
230        Stack<HObject> stack = new Stack<HObject>();
231        HObject currentObj = this;
232
233        // Push elements onto the stack in reverse order
234        List<HObject> list = ((Group) currentObj).getMemberList();
235        for(int i = list.size() - 1; i >= 0; i--) {
236            stack.push(list.get(i));
237        }
238
239        while(!stack.empty()) {
240            currentObj = stack.pop();
241            members.add(currentObj);
242
243            if(currentObj instanceof Group && ((Group) currentObj).getNumberOfMembersInFile() > 0) {
244                list = ((Group) currentObj).getMemberList();
245                for(int i = list.size() - 1; i >= 0; i--) {
246                    stack.push(list.get(i));
247                }
248            }
249        }
250
251        return members;
252    }
253
254    /**
255     * Sets the name of the group.
256     * <p>
257     * setName (String newName) changes the name of the group in memory and
258     * file.
259     * <p>
260     * setName() updates the path in memory for all the objects that are under
261     * the group with the new name.
262     *
263     * @param newName
264     *            The new name of the group.
265     *
266     * @throws Exception if the name can not be set
267     */
268    @Override
269    public void setName(String newName) throws Exception {
270        super.setName(newName);
271
272        if (memberList != null) {
273            int n = memberList.size();
274            HObject theObj = null;
275            for (int i = 0; i < n; i++) {
276                theObj = memberList.get(i);
277                theObj.setPath(this.getPath() + newName + HObject.separator);
278            }
279        }
280    }
281
282    /** @return the parent group. */
283    public final Group getParent() {
284        return parent;
285    }
286
287    /**
288     * Checks if it is a root group.
289     *
290     * @return true if the group is a root group; otherwise, returns false.
291     */
292    public final boolean isRoot() {
293        return (parent == null);
294    }
295
296    /**
297     * Returns the total number of members of this group in file.
298     *
299     * Current Java applications such as HDFView cannot handle files with large
300     * numbers of objects (1,000,000 or more objects) due to JVM memory
301     * limitation. The max_members is used so that applications such as HDFView
302     * will load up to <i>max_members</i> number of objects. If the number of
303     * objects in file is larger than <i>max_members</i>, only
304     * <i>max_members</i> are loaded in memory.
305     * <p>
306     * getNumberOfMembersInFile() returns the number of objects in this group.
307     * The number of objects in memory is obtained by getMemberList().size().
308     *
309     * @return Total number of members of this group in the file.
310     */
311    public int getNumberOfMembersInFile() {
312        return nMembersInFile;
313    }
314
315    /**
316     * Get the HObject at the specified index in this Group's member list.
317     * @param idx The index of the HObject to get.
318     * @return The HObject at the specified index.
319     */
320    public HObject getMember(int idx) {
321        if(memberList.size() <= 0 || idx >= memberList.size()) return null;
322
323        return memberList.get(idx);
324    }
325}