| Summary of Software Using HDF5 by
Name (December 2017) |
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| Name
(with Product URL) |
Application Type |
Open Source
/ Commercial |
Platforms |
Languages |
Short
Description |
| ActivePapers
(http://www.activepapers.org) |
General Problem Solving |
Open Source |
|
|
File format for storing computations. |
| Adaptive
Entropy Encoding Library |
Special Purpose |
Open Source |
|
|
Freely available SZIP implementation available from the German
Climate Computing Center |
| ADIOS |
Special Purpose |
Open Source |
|
|
IO componentization of different IO transport methods |
| Adxv |
Visualization/Analysis |
Open Source |
Linux, Mac, Windows |
|
Software for the display and analysis of X-Ray diffraction
images |
| Alembic |
Visualization |
Open Source |
|
|
Computer graphics interchange framework |
| Amelet-HDF |
Special Purpose |
Open Source |
|
|
API to provide standard for working with electromagnetic data |
| Bathymetric Attributed
Grid Data Format |
Special Purpose |
Open Source |
Linux, Win32 |
|
File format for storing bathymetric data |
| BEAM |
Special Purpose |
Open Source |
|
|
Basic ENVISAT Toolbox for (A)ATSR and MERIS data |
| Bear |
Special Purpose |
Open Source |
|
|
Bers slices and holomy representations |
| BEAT |
Visualization/Analysis |
Open Source |
Unix, Windows,Mac |
|
Toolkit for working w/atmospheric data |
| Cactus |
General Problem Solving |
|
|
|
Problem solving environment |
| Ceemple |
Special Purpose |
Commercial |
|
C++ |
Rapid C++ technical computing environment,with built-in HDF
support |
| CGNS |
Special Purpose |
Open Source |
|
|
Software for working with CFD Analysis data |
| Chombo |
Special Purpose |
Open Source |
|
|
Tools for working with partial differential equations |
| CSP |
Format Conversion |
Open Source |
|
|
Command-line tool to
convert/plot a Perkin Elmer sp3 spectra file into HDF5 |
| Damaris |
Visualization/Analysis |
Open Source |
|
C++, Fortran |
Middleware for in-situ data analysis and visualization in
support of HPC simulations |
| Data Visualizer
for O-Matrix |
Visualization/Analysis |
Commercial |
Windows |
|
O-Matrix command-line interface that works with Intel Array
Visualizer |
| Dawn |
Visualization/Analysis |
Open Source |
|
Python |
Visualization and Analysis platform for synchrotron data |
| Derby |
Special Purpose |
Open Source |
|
|
Data browser for exploring product types from GCM |
| DIAdem (HDF5 DataPlugin) |
Sci Data Mgmt |
Commercial |
|
|
Helps engineers and scientists to quickly locate, inspect,
analyze, and report on measurement data |
| DREAM.3D |
Visualization/Analysis |
Open Source |
|
|
A software environment for analyzing digital microstructure
dataA |
| dxhdf5 |
Format
Conversion |
Open Source |
|
|
Import HDF5 data into Open DX |
| EnSight |
Visualization/Analysis |
Commercial |
Many |
|
Tools for engineering and scientific simulation |
| Fiberbundle HDF5 (F5) |
Visualization/Analysis |
Open Source |
|
C |
I/O library that implements a common data model for scientific
visualization |
| Field3D |
Visualization |
Open Source |
Linux, Mac |
C++ |
Library/format for storing voxel data |
| FLASH |
Special Purpose |
Open Source |
|
|
Code for simulation of thermonuclear flashes |
| G4Linac_MT |
Special Purpose |
Open Source |
|
C++ |
A Geant4 application to model a Medical Linear Accelerator, used
in Radiotherapy to treat cancer diseases by employing ionizing radiation |
| Galacticus |
Special Purpose |
Open Source |
|
|
A semi-analytic model of galaxy formation |
| Geomatica |
Visualization/Analysis |
Commercial |
|
|
Integrated software system for remote sensing and image
processing |
| Globe Claritas |
Special Purpose |
Commercial |
Linux, Windows, Solaris |
|
Seismic processing software (geophysics) |
| GNU Octave |
Visualization/Analysis |
Open Source |
|
|
MATLAB-like tool |
| GriKSL |
General Problem Solving |
Open Source |
|
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Develop grid-based simulation and viz techniques for CACTUS |
| h5check |
HDF Tools |
Open Source |
Linux, Solaris |
|
A tool to check the validity of an HDF5 file |
| h5edit |
General Problem Solving |
Open Source |
Linux, Windows |
|
Command-line tool to edit HDF5 files. Currently limited to
operations on attributes |
| H5hut |
Special Purpose |
Open Source |
Many |
C, C++, Fortran |
High performance I/O library for particle based simulations. |
| h5labview |
Instrumentation |
Open Source |
|
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Interface between NI LabVIEW and HDF5 |
| H5MD |
API for HDF5 |
Open Source |
|
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File format specification for efficient and portable storage of
molecular data |
| h5py |
API for HDF5 |
Open Source |
Linux, Mac, Windows |
Python |
Python interface to HDF5 |
| H5utils |
Format
Conversion |
Open Source |
|
|
Conversion and Visualization tools for HDF5 |
| H5WS API |
Remote Access |
Open Source |
Linux |
C |
API that allows remote HDF5 data access using Web Services. |
| HDF Compass |
Visualization |
Open Source |
|
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A visual tool to navigate HDF5 files |
| HDF Explorer |
Browser/Editor |
Commercial |
Windows |
|
Data Visualization program for HDF and HDF5 |
| HDF Java
Products |
API for HDF5 |
Open Source |
Many |
Java |
Java API for HDF and HDF5 and HDFView tool |
| HDF Server |
Remote Access |
Open Source |
|
|
Python-based web service to send/receive HDF5 data using
HTTP-based REST interface |
| HDF4 to HDF5
Conversion Library |
Format Conversion |
Open Source |
Linux, Solaris |
|
Library and tools to convert HDF4 files to HDF5 files |
| HDF5 and .NET |
API for HDF5 |
Open Source |
|
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P/Invoke declarations for core HDF5 C-API |
| HDF5
bindings for Delphi |
API for HDF5 |
Open Source |
|
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Delphi module with HDF5 bindings |
| HDF5 High Level APIs |
API for HDF5 |
Open Source |
|
C, Fortran |
High Level APIs that come with HDF5 to simplify code and provide
standards |
| HDF5 Indexing Prototype |
API for fast querying in HDF5 |
Open Source |
|
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Prototype for storing bitmap and projection indices in HDF5 |
| HDF5 Mesh API |
Sci Data Mgmt |
Open Source |
|
C |
Prototype for storing structured and unstructured grids in HDF5 |
| HDF5
Plugin for ImageJ and Fiji |
Special Purpose |
Open Source |
|
|
Java plugin for ImageJ and Fij image processing package |
| HDF5
Utilities |
HDF Tools |
Open Source |
All |
|
Utilities that come with HDF5 for analyzing and converting HDF5
files and compiling HDF5 applications |
| HDF5 XML |
Format
Conversion |
Open Source |
|
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An HDF5 DTD and tool |
| HDF5-FastQuery |
API for fast querying in HDF5 |
|
|
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APIs to extend HDF5 selection and accelerate queries |
| hdf5read |
General Problem Solving |
Open Source |
|
Fortran 90 |
Module to read selected datasets and attributes from
HDF5/HDF-EOS data files |
| HDF-EOS |
Special Purpose |
Open Source |
|
|
Software for working with remote-sensed data from Earth
Observing System |
| HDFql |
High-level language for HDF5 (similar to SQL) |
Open Source |
Windows, Linux and Mac OS X |
C, C++, Java, Python, C#, Fortran |
Tool to manage HDF5 files. Reads and writes HDF data through a
simple and clean interface. |
| HDFView |
Browser/Editor |
Open Source |
Many |
|
Java-based tool for viewing and editing HDF and HDF5 files |
| HL-HDF |
Sci Data Mgmt |
Open Source |
|
C, Python |
C & Python high level library for scientific data in HDF5 |
| HydroVISH |
Visualization/Analysis |
Commercial |
Linux, Mac, Windows |
C++ |
Visualization framework built on top of Vish for lidar and
multisensor mass data |
| IDL |
Visualization/Analysis |
Commercial |
Many |
IDL |
Visualize and analyze HDF data with IDL. Query, read HDF files. |
| Igor Pro |
Visualization/Analysis |
Commercial |
Windows, Mac |
C, Igor |
Visualize/analyze 1D, 2D, 3D data |
| Intel
Array Visualizer |
Visualization/Analysis |
Commercial |
Windows |
|
Windows app to read, write, display array data from HDF4, HDF5,
others |
| ITK |
Special Purpose |
Open Source |
Many |
Many |
Toolkit for performing registration and segmentation of medical
images |
| JHDF5 |
API for HDF5 |
Open Source |
|
Java |
High Level Java API for HDF5 |
| LIBGPIV |
Special Purpose |
Open Source |
|
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Library for (Digital) Particle Image Velocimetry Technique |
| lvhdf5 |
API for HDF5 |
Open Source |
|
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HDF5 API for Labview |
| Mathematica |
Visualization/Analysis |
Commercial |
|
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Environment for technical tasks ranging from computations to
visualizing or modeling data |
| MATLAB |
Visualization/Analysis |
Commercial |
Many |
|
Numeric computation, advanced graphics and visualization. Query,
read HDF files |
| MDSplus |
Management and Access |
Open Source |
|
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Tools for data acquisition and storage; methodology for
management of complex scientific data |
| MED |
Special Purpose |
Open Source |
|
|
Standard for storing and recovering data associated with
numerical meshes and fields. |
| MeteoInfo |
Visualization/Analysis |
Open Source |
|
C# |
Software to view and analyze meteorological and spatial data
interactively |
| Million Song Dataset |
Special Purpose |
Open Source |
|
|
Collection of audio features and metadata for a million
contemporary music tracks |
| Mirador |
Management and Access |
|
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Earth Science Data Search Tool |
| MOAB |
Special Purpose |
Open Source |
Linux/Unix |
C++ |
Component for representing and evaluating mesh data |
| Mosaik |
Special Purpose |
|
|
Python |
A flexible smart grid co-simulation framework |
| MultiSpec |
Visualization/Analysis |
Open Source |
|
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Remote sensing analysis
application for multispectral and hyperspectral data |
| MXA |
API for HDF5 |
Open Source |
|
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File format and API for managing data from scientific
experiments using XML |
| mz5 |
Special
Purpose |
Open Source |
|
|
Space- and time-efficient storage of mass spectrometry data sets |
| NCL (NCAR Command Language) |
Visualization/Analysis |
Open Source |
|
|
Interpreted language for sci data analysis and visualization |
| NetCDF-4 |
API for HDF5 |
Open Source |
Many |
Fortran, C++, Java |
Set of interfaces for array-oriented data access |
| NeuroHDF |
Special Purpose |
Open Source |
|
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Software to manage neuroscience data |
| NeXus |
API for HDF5 |
Open Source |
|
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Common data format for neutron, x-ray and muon science |
| NI-HWS |
Instrumentation |
Commercial |
|
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Uses limited subset of HDF5 for storage and retrieval of
waveforms and attributes |
| O-Matrix |
Visualization/Analysis |
Commercial |
|
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Interpreted matrix language for data analysis and visualization |
| OpenCV |
Visualization/Analysis |
Open Source |
|
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Computer vision and machine learning software library |
| OPeNDAP |
Management and Access |
N/A |
|
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Software framework for remote scientific data transfer and
access |
| Opticks |
Visualization/Analysis |
Open Source |
|
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Expandable remote sensing and imagery analysis platform |
| OpticsBenchUI |
Special Purpose |
Open Source |
Linux |
C, Fortran |
Demo of integrated solution to manage a simple optics bench of
cameras, motors and DACs |
| OSSIM |
Visualization |
Open Source |
|
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Open Source Software Image Map library for geospatial image
processing |
| PAM-CRASH |
Special Purpose |
Commercial |
Unix, Linux, Windows |
C, Fortran |
ESI's open HDF5 database format to store results of FEM-based
simulations |
| pandas
(http://pandas.pydata.org/) |
API for HDF5 |
Open Source |
|
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Python Data
Analysis Library |
| Paramesh |
Special Purpose |
Open Source |
|
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Fortran subroutines to extend serial AMR code to parallel |
| ParaView |
Visualization/Analysis |
Open Source |
|
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Visualize large data sets in serial or parallel environments,
using VTK |
| pconvert |
Special Purpose |
Open Source |
|
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Command-line tool to convert BEAM and ENVISAT products to HDF5 |
| PhDC4D |
Special Purpose |
Commercial |
|
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Software for maintenance management of ships, offshore
structures and static equipment |
| Pomegranate |
Management and Access |
Open Source |
Independent |
Python |
Web service software, web API, library and command line tool |
| PSH5X |
General Problem Solving |
Open Source |
Windows |
|
Windows powershell module for HDF5 |
| PV-WAVE |
Visualization/Analysis |
Commercial |
Many |
PV-WAVE |
Visualization and Analysis language and environment |
| PyHexad |
General Problem Solving |
Open Source |
|
|
Python-based Excel add-in for HDF5 |
| pyqt-h5browser |
Browser/Editor |
Open Source |
|
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HDF5 Python browser |
| pyrat |
Special Purpose |
Open Source |
|
Python |
Simplifies handling of large multi-frequency radio
interferometric visibility datasets and images |
| PyTables |
Database |
Open Source |
|
Python |
Python API to organize and manipulate scientific data tables and
other numeric objects |
| Q5Cost |
Special Purpose |
|
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Fortran |
Library and interface used in Quantum Chemistry |
| R |
Statistics,
Graphics |
Open Source |
|
R |
System for statistical computation and graphics, has HDF5
interface |
| RAMS |
Special Purpose |
Open Source |
|
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Atmospheric Modeling System |
| RESQML |
Special Purpose |
Open Source |
|
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Exchange standard for subsurface data |
| Rybo Geo Data |
Special Purpose |
|
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Processing of Airborne Geophysical Data |
| Salome |
General Problem Solving |
Open Source |
|
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A journaling filesystem driver for HDF5 based on SEC2 driver |
| Salome |
Special Purpose |
Open Source |
Linux |
|
CAD/CAE integration and development platform |
| Scilab |
Special Purpose |
Open Source |
|
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Scientific software package for numerical computations |
| SCiLS Lab |
Visualization/Analysis |
Commercial |
|
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Software for statistical analysis of MALDI imaging data |
| SeisHDF
plug-in |
Special Purpose |
Commercial |
|
|
Plug-in for Petrel 2013
for exporting to and importing from HDF5 files. |
| Silo |
Special Purpose |
Open Source |
|
C, C++ |
A mesh and field I/O library and scientific database |
| SLh5 |
Visualization/Analysis |
Open Source |
|
S-Lang |
Open source HDF5 module for S-Lang |
| SPDLib |
API for HDF5 |
Open Source |
|
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Software for processing laser scanning data (i.e., LiDAR) |
| STAR-CCM+ |
Special Purpose |
Commercial |
|
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CFD software |
| Swarm |
Special Purpose |
Open Source |
|
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Simulator for fine-grained, composable scheduling |
| SWX |
Special Purpose |
Open Source |
|
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Space Weather Explorer to visualize space weather model output
in 3D |
| SYSTEMA / THERMICA |
Visualization/Analysis |
Commercial |
Linux, Solaris, Windows |
|
Spacecraft modeler and thermal analyser |
| Tecplot |
Visualization |
Commercial |
Many |
|
Interactive visualization program |
| THESEUS-FE |
Special Purpose |
Commercial |
Linux, Windows |
|
Simulation software based on Finite-Element solver methodology
for handling thermal radiation |
| TPC5 |
Special Purpose |
Commercial |
|
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HDF5-based format for multi-channel data acquisition |
| Veusz |
Visualization/Analysis |
Open Source |
Many |
|
Scientific plotting and graphing package to provide
publication-ready output and edit/view data. |
| VisAD |
Visualization/Analysis |
Open Source |
|
Java |
Java toolkit for interactive and collaborative viz and analysis |
| Vish |
Visualization/Analysis |
Open Source |
Linux, Mac, Windows |
|
Flexible software environment
for processing and visualizing spatio-temporal data (uses F5) |
| VisIt |
Visualization/Analysis |
Open Source |
|
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Tool for visualizing fields in 2D and 3D meshes |
| ViTables |
Browser/Editor |
Open Source |
Many |
|
PyTables and HDF5 file viewer and editor |
| VSIM |
Special Purpose |
Commercial |
Many |
C++, GUI |
PIC (particle-in-cell)
simulation tool to run plasma, electromagnetic and electrostatic
problems |
| WaveCut |
Special Purpose |
Commercial |
Linux, Windows |
|
Application with GUI for analyzing large amounts of signal
waveform data |
| XDMF |
Special Purpose |
Open Source |
|
Many |
Data format and library using XML and HDF5 in High Performance
Computing |
| Yorick |
Visualization/Analysis |
Open Source |
Many |
Yorick |
Interpreted programming language |
| Zori |
Special Purpose |
Open Source |
|
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Calculate properties of atoms/molecules using quantum Monte
Carlo methods |
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