All Classes All Packages
A
- addDataView(DataView) - Method in class hdf.view.HDFView
- addExtension(String) - Method in class hdf.view.DefaultFileFilter
-
Adds a filetype "dot" extension to filter against.
- addFileExtension(String) - Static method in class hdf.object.FileFormat
-
Adds file extension(s) to the list of file extensions for supported file formats.
- addFileFormat(String, FileFormat) - Static method in class hdf.object.FileFormat
-
Adds a FileFormat with specified key to the list of supported formats.
- addFilteredImageValue(Number) - Method in class hdf.object.ScalarDS
-
Add a value that will be filtered out in an image.
- addToMemberList(HObject) - Method in class hdf.object.Group
-
Adds an object to the member list of this group in memory.
- AND - hdf.view.ViewProperties.BITMASK_OP
- applyBitmask(Object, BitSet, ViewProperties.BITMASK_OP) - Static method in class hdf.view.Tools
-
Apply bitmask to a data array.
- arrayDims - Variable in class hdf.object.Datatype
-
The dimensions of the ARRAY element of an ARRAY datatype.
- Attribute - Class in hdf.object
-
An attribute is a (name, value) pair of metadata attached to a primary data object such as a dataset, group or named datatype.
- Attribute(HObject, String, Datatype, long[]) - Constructor for class hdf.object.Attribute
-
Create an attribute with specified name, data type and dimension sizes.
- Attribute(HObject, String, Datatype, long[], Object) - Constructor for class hdf.object.Attribute
-
Create an attribute with specific name and value.
- autoContrastApply(Object, Object, double[], double[], boolean) - Static method in class hdf.view.Tools
-
Apply autocontrast parameters to the original data in place (destructive)
- autoContrastCompute(Object, double[], boolean) - Static method in class hdf.view.Tools
-
Computes autocontrast parameters (gain equates to contrast and bias equates to brightness) for integers.
- autoContrastComputeMinMax(Object, double[]) - Static method in class hdf.view.Tools
-
Computes autocontrast parameters by
- autoContrastConvertImageBuffer(Object, byte[], boolean) - Static method in class hdf.view.Tools
-
Converts image raw data to bytes.
B
- baseType - Variable in class hdf.object.Datatype
-
The base datatype of this datatype (null if this datatype is atomic).
- BITMASK - hdf.view.ViewProperties.DATA_VIEW_KEY
- BITMASKOP - hdf.view.ViewProperties.DATA_VIEW_KEY
- BORDER - hdf.view.ViewProperties.DATA_VIEW_KEY
- breadthFirstMemberList() - Method in class hdf.object.Group
- byteToString(byte[], int) - Static method in class hdf.object.Dataset
-
Converts an array of bytes into an array of Strings for a fixed string dataset.
C
- CHAR - hdf.view.ViewProperties.DATA_VIEW_KEY
- Chart - Class in hdf.view
-
ChartView displays a histogram/line chart of selected row/column of table data or image data.
- Chart(Shell, String, int, double[][], double[], double[]) - Constructor for class hdf.view.Chart
-
Constructs a new ChartView given data and data ranges.
- chartP - Variable in class hdf.view.Chart
-
Panel that draws plot of data values.
- checkNewFile(String, String) - Static method in class hdf.view.Tools
-
Check and find a non-exist file.
- checkValidJavaArrayIndex(long) - Static method in class hdf.view.Tools
-
Since Java does not allow array indices to be larger than int type, check the given value to see if it is within the valid range of a Java int.
- chunkSize - Variable in class hdf.object.Dataset
-
The array of dimension sizes for a chunk.
- CLASS_ARRAY - Static variable in class hdf.object.Datatype
- CLASS_BITFIELD - Static variable in class hdf.object.Datatype
- CLASS_CHAR - Static variable in class hdf.object.Datatype
- CLASS_COMPOUND - Static variable in class hdf.object.Datatype
- CLASS_ENUM - Static variable in class hdf.object.Datatype
- CLASS_FLOAT - Static variable in class hdf.object.Datatype
- CLASS_INTEGER - Static variable in class hdf.object.Datatype
- CLASS_NO_CLASS - Static variable in class hdf.object.Datatype
- CLASS_OPAQUE - Static variable in class hdf.object.Datatype
- CLASS_REFERENCE - Static variable in class hdf.object.Datatype
- CLASS_STRING - Static variable in class hdf.object.Datatype
- CLASS_TIME - Static variable in class hdf.object.Datatype
- CLASS_VLEN - Static variable in class hdf.object.Datatype
- clear() - Method in class hdf.object.Dataset
-
Clears memory held by the dataset, such as the data buffer.
- clear() - Method in class hdf.object.Group
-
Clears up member list and other resources in memory for the group.
- clearData() - Method in class hdf.object.Attribute
- clearData() - Method in interface hdf.object.DataFormat
-
Clears the current data buffer in memory and forces the next read() to load the data from file.
- clearData() - Method in class hdf.object.Dataset
-
Clears the current data buffer in memory and forces the next read() to load the data from file.
- clearData() - Method in class hdf.object.ScalarDS
- close() - Method in class hdf.object.FileFormat
-
Closes file associated with this instance.
- close(long) - Method in class hdf.object.Attribute
- close(long) - Method in class hdf.object.Datatype
-
Closes a datatype identifier.
- close(long) - Method in class hdf.object.HObject
-
Closes access to the object.
- closeFile(FileFormat) - Method in class hdf.view.HDFView
- CompoundDataFormat - Interface in hdf.object
-
An interface that provides general operations for data with a Compound datatype.
- CompoundDS - Class in hdf.object
-
A CompoundDS is a dataset with compound datatype.
- CompoundDS(FileFormat, String, String) - Constructor for class hdf.object.CompoundDS
-
Constructs a CompoundDS object with the given file, dataset name and path.
- CompoundDS(FileFormat, String, String, long[]) - Constructor for class hdf.object.CompoundDS
-
Deprecated.Not for public use in the future.
UsingCompoundDS(FileFormat, String, String)
- compoundMemberNames - Variable in class hdf.object.Datatype
-
The list of names of members of a compound Datatype.
- compoundMemberOffsets - Variable in class hdf.object.Datatype
-
The list of offsets of members of a compound Datatype.
- compoundMemberTypes - Variable in class hdf.object.Datatype
-
The list of types of members of a compound Datatype.
- compression - Variable in class hdf.object.Dataset
-
The compression information.
- COMPRESSION_GZIP_TXT - Static variable in class hdf.object.Dataset
- computeStatistics(Object, double[], Object) - Static method in class hdf.view.Tools
-
Computes mean and standard deviation of a data array
- CONVERTBYTE - hdf.view.ViewProperties.DATA_VIEW_KEY
- convertByteToString - Variable in class hdf.object.Dataset
-
Flag to indicate if the byte[] array is converted to strings
- convertedBuf - Variable in class hdf.object.Dataset
-
The array that holds the converted data of unsigned C-type integers.
- convertFromUnsignedC() - Method in class hdf.object.Attribute
-
Converts the data values of this Attribute to appropriate Java integers if they are unsigned integers.
- convertFromUnsignedC() - Method in interface hdf.object.DataFormat
-
Converts the data values of this data object to appropriate Java integers if they are unsigned integers.
- convertFromUnsignedC() - Method in class hdf.object.ScalarDS
-
Converts the data values of this dataset to appropriate Java integer if they are unsigned integers.
- convertFromUnsignedC(Object) - Static method in class hdf.object.Dataset
-
Deprecated.Not for public use in the future.
UsingDataset.convertFromUnsignedC(Object, Object)
- convertFromUnsignedC(Object, Object) - Static method in class hdf.object.Dataset
-
Converts one-dimension array of unsigned C-type integers to a new array of appropriate Java integer in memory.
- convertImageToHDF(String, String, String, String) - Static method in class hdf.view.Tools
-
Converts an image file into HDF4/5 file.
- convertToUnsignedC() - Method in class hdf.object.Attribute
-
Converts Java integer data values of this Attribute back to unsigned C-type integer data if they are unsigned integers.
- convertToUnsignedC() - Method in interface hdf.object.DataFormat
-
Converts Java integer data values of this data object back to unsigned C-type integer data if they are unsigned integers.
- convertToUnsignedC() - Method in class hdf.object.ScalarDS
-
Converts Java integer data of this dataset back to unsigned C-type integer data if they are unsigned integers.
- convertToUnsignedC(Object) - Static method in class hdf.object.Dataset
-
Deprecated.Not for public use in the future.
UsingDataset.convertToUnsignedC(Object, Object)
- convertToUnsignedC(Object, Object) - Static method in class hdf.object.Dataset
-
Converts the array of converted unsigned integers back to unsigned C-type integer data in memory.
- convertUINT64toBigInt(Long) - Static method in class hdf.view.Tools
-
Converts unsigned 64-bit integer data to a BigInteger since Java does not have unsigned types.
- copy(Group, String, long[], Object) - Method in class hdf.object.Attribute
- copy(Group, String, long[], Object) - Method in class hdf.object.CompoundDS
-
Deprecated.Not implemented for compound dataset.
- copy(Group, String, long[], Object) - Method in class hdf.object.Dataset
-
Creates a new dataset and writes the data buffer to the new dataset.
- copy(HObject, Group) - Method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.copy(HObject, Group, String)
To mimic the behavior originally provided by this method, call the replacement method with
null
as the 3rd parameter. - copy(HObject, Group, String) - Method in class hdf.object.FileFormat
-
Copies the source object to a new destination.
- create(String) - Method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.createFile(String, int)
The replacement method has an additional parameter that controls the behavior if the file already exists. Use
FileFormat.FILE_CREATE_DELETE
as the second argument in the replacement method to mimic the behavior originally provided by this method. - CREATE - Static variable in class hdf.object.FileFormat
-
File access flag for creating/truncating with read-write permission.
- createCompoundDS(String, Group, long[], long[], long[], int, String[], Datatype[], int[], Object) - Method in class hdf.object.FileFormat
-
Creates a new compound dataset in a file with/without chunking and compression.
- createCompoundDS(String, Group, long[], String[], Datatype[], int[], Object) - Method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.createCompoundDS(String, Group, long[], long[], long[], int, String[], Datatype[], int[], Object)
The replacement method has additional parameters:
maxdims, chunks,
andgzip
. To mimic the behavior originally provided by this method, call the replacement method with the following parameter list:( name, pgroup, dims, null, null, -1, memberNames, memberDatatypes, memberSizes, data );
- createDatatype(int, int, int, int) - Method in class hdf.object.FileFormat
-
Creates a new datatype in memory.
- createDatatype(int, int, int, int, Datatype) - Method in class hdf.object.FileFormat
-
Creates a new datatype in memory.
- createDatatype(int, int, int, int, Datatype, String) - Method in class hdf.object.FileFormat
-
Creates a named datatype in a file.
- createDatatype(int, int, int, int, String) - Method in class hdf.object.FileFormat
-
Creates a named datatype in a file.
- createFile(String, int) - Method in class hdf.object.FileFormat
-
Creates a file with the specified name and returns a new FileFormat implementation instance associated with the file.
- createGcpl(int, int, int) - Method in class hdf.object.FileFormat
-
Creates the group creation property list identifier, gcpl.
- createGrayPalette() - Static method in class hdf.view.Tools
-
Creates the gray palette of the indexed 256-color table.
- createGrayWavePalette() - Static method in class hdf.view.Tools
-
Creates the gray wave palette of the indexed 256-color table.
- createGroup(String, Group) - Method in class hdf.object.FileFormat
-
Creates a new group with specified name in existing group.
- createGroup(String, Group, long...) - Method in class hdf.object.FileFormat
-
Creates a new group with specified name in existing group.
- createImage(String, Group, Datatype, long[], long[], long[], int, int, int, Object) - Method in class hdf.object.FileFormat
-
Creates a new image in a file.
- createIndexedImage(BufferedImage, byte[], byte[][], long, long) - Static method in class hdf.view.Tools
-
Creates a RGB indexed image of 256 colors.
- createInstance(String, int) - Method in class hdf.object.FileFormat
-
Creates a FileFormat implementation instance with specified filename and access.
- createLink(Group, String, HObject, int) - Method in class hdf.object.FileFormat
-
Creates a soft, hard or external link to an existing object in the open file.
- createLink(Group, String, Object) - Method in class hdf.object.FileFormat
-
Creates a link to an existing object in the open file.
- createLink(Group, String, String, int) - Method in class hdf.object.FileFormat
-
Creates a soft or external link to an object in a file that does not exist at the time the link is created.
- createNative() - Method in class hdf.object.Datatype
-
Converts the datatype object to a native datatype.
- createNaturePalette() - Static method in class hdf.view.Tools
-
Creates the nature palette of the indexed 256-color table.
- createNewFile(String, String, String, List<FileFormat>) - Static method in class hdf.view.Tools
-
Create a new HDF file with default file creation properties
- createPropertyFile(String, String) - Static method in class hdf.view.ViewProperties
- createRainbowPalette() - Static method in class hdf.view.Tools
-
Creates the rainbow palette of the indexed 256-color table.
- createReverseGrayPalette() - Static method in class hdf.view.Tools
-
Creates the reverse gray palette of the indexed 256-color table.
- createScalarDS(String, Group, Datatype, long[], long[], long[], int, Object) - Method in class hdf.object.FileFormat
- createScalarDS(String, Group, Datatype, long[], long[], long[], int, Object, Object) - Method in class hdf.object.FileFormat
-
Creates a new dataset in a file with/without chunking/compression.
- createTrueColorImage(byte[], boolean, long, long) - Static method in class hdf.view.Tools
-
Creates a true color image.
- createWavePalette() - Static method in class hdf.view.Tools
-
Creates the wave palette of the indexed 256-color table.
- CRT_ORDER_INDEXED - Static variable in class hdf.object.Group
- CRT_ORDER_TRACKED - Static variable in class hdf.object.Group
D
- data - Variable in class hdf.object.Dataset
-
The memory buffer that holds the raw data array of the dataset.
- data - Variable in class hdf.view.Chart
-
the data values of line points or histogram
- DataFormat - Interface in hdf.object
-
An interface that provides general I/O operations for object data.
- Dataset - Class in hdf.object
-
The abstract class provides general APIs to create and manipulate dataset objects, and retrieve dataset properties, datatype and dimension sizes.
- Dataset(FileFormat, String, String) - Constructor for class hdf.object.Dataset
-
Constructs a Dataset object with a given file, name and path.
- Dataset(FileFormat, String, String, long[]) - Constructor for class hdf.object.Dataset
-
Deprecated.Not for public use in the future.
UsingDataset(FileFormat, String, String)
- datatype - Variable in class hdf.object.Dataset
-
The datatype object of the dataset.
- Datatype - Class in hdf.object
-
Datatype is an abstract class that defines datatype characteristics and APIs for a data type.
- Datatype(int, int, int, int) - Constructor for class hdf.object.Datatype
-
Constructs a Datatype with specified class, size, byte order and sign.
- Datatype(int, int, int, int, Datatype) - Constructor for class hdf.object.Datatype
-
Constructs a Datatype with specified class, size, byte order and sign.
- Datatype(int, int, int, int, Datatype, Datatype) - Constructor for class hdf.object.Datatype
-
Constructs a Datatype with specified class, size, byte order and sign.
- Datatype(long) - Constructor for class hdf.object.Datatype
-
Constructs a Datatype with a given native datatype identifier.
- Datatype(long, Datatype) - Constructor for class hdf.object.Datatype
-
Constructs a Datatype with a given native datatype identifier.
- Datatype(FileFormat, String, String) - Constructor for class hdf.object.Datatype
-
Constructs a named datatype with a given file, name and path.
- Datatype(FileFormat, String, String, long[]) - Constructor for class hdf.object.Datatype
-
Deprecated.Not for public use in the future.
UsingDatatype(FileFormat, String, String)
- datatypeClass - Variable in class hdf.object.Datatype
-
The class of the datatype.
- datatypeDescription - Variable in class hdf.object.Datatype
- datatypeOrder - Variable in class hdf.object.Datatype
-
The byte order of the datatype.
- datatypeSign - Variable in class hdf.object.Datatype
-
The sign of the datatype.
- datatypeSize - Variable in class hdf.object.Datatype
-
The size (in bytes) of the datatype.
- debug(Object) - Method in class hdf.object.HObject
-
Print out debug information
- DEFAULT_COMPOUND_DATASET_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties
- DEFAULT_DATASET_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
- DEFAULT_DATATYPE_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
- DEFAULT_GROUP_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
-
Default MetaDataView class names
- DEFAULT_IMAGEVIEW_NAME - Static variable in class hdf.view.ViewProperties
-
Default ImageView class names
- DEFAULT_LINK_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
- DEFAULT_MODULE_TEXT - Static variable in class hdf.view.ViewProperties
-
Text for default selection of modules
- DEFAULT_PALETTEVIEW_NAME - Static variable in class hdf.view.ViewProperties
-
Default PaletteView class names
- DEFAULT_SCALAR_ATTRIBUTE_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties
- DEFAULT_SCALAR_DATASET_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties
-
Default TableView class names
- DEFAULT_TREEVIEW_NAME - Static variable in class hdf.view.ViewProperties
-
Default TreeView class names
- DefaultFileFilter - Class in hdf.view
-
A convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about.
- DefaultFileFilter() - Constructor for class hdf.view.DefaultFileFilter
-
Creates a file filter.
- DefaultFileFilter(String) - Constructor for class hdf.view.DefaultFileFilter
-
Creates a file filter that accepts files with the given extension.
- DefaultFileFilter(String[]) - Constructor for class hdf.view.DefaultFileFilter
-
Creates a file filter from the given string array.
- DefaultFileFilter(String[], String) - Constructor for class hdf.view.DefaultFileFilter
-
Creates a file filter from the given string array and description.
- DefaultFileFilter(String, String) - Constructor for class hdf.view.DefaultFileFilter
-
Creates a file filter that accepts the given file type.
- delete(HObject) - Method in class hdf.object.FileFormat
-
Deletes an object from a file.
- DELIMITER_COLON - Static variable in class hdf.view.ViewProperties
-
name of the tab delimiter
- DELIMITER_COMMA - Static variable in class hdf.view.ViewProperties
-
name of the tab delimiter
- DELIMITER_SEMI_COLON - Static variable in class hdf.view.ViewProperties
-
name of the tab delimiter
- DELIMITER_SPACE - Static variable in class hdf.view.ViewProperties
-
name of the tab delimiter
- DELIMITER_TAB - Static variable in class hdf.view.ViewProperties
-
name of the tab delimiter
- depthFirstMemberList() - Method in class hdf.object.Group
- dimNames - Variable in class hdf.object.Dataset
-
Array of strings that represent the dimension names.
- dims - Variable in class hdf.object.Dataset
-
The current dimension sizes of the dataset
E
- enumMembers - Variable in class hdf.object.Datatype
-
The (name, value) pairs of enum members.
- equals(HObject) - Method in class hdf.object.HObject
-
Returns whether this HObject is equal to the specified HObject by comparing their OIDs.
- equals(Object) - Method in class hdf.object.Attribute
-
Returns whether this Attribute is equal to the specified HObject by comparing various properties.
- equals(Object) - Method in class hdf.object.HObject
- equalsOID(long[]) - Method in class hdf.object.HObject
-
Checks if the OID of the object is the same as the given object identifier within the same file.
- exportDataset(String, String, String, int) - Method in class hdf.object.FileFormat
-
Export dataset.
- EXTRACT - hdf.view.ViewProperties.BITMASK_OP
F
- fid - Variable in class hdf.object.FileFormat
-
File identifier.
- FILE_CREATE_DELETE - Static variable in class hdf.object.FileFormat
-
Flag for creating/truncating a file.
- FILE_CREATE_EARLY_LIB - Static variable in class hdf.object.FileFormat
-
Flag to indicate if the earliest version of library is used when creating a new file.
- FILE_CREATE_OPEN - Static variable in class hdf.object.FileFormat
-
Flag for creating/opening a file.
- FILE_OBJ_SEP - Static variable in class hdf.object.FileFormat
-
A separator that separates file name and object name.
- FILE_TYPE_BMP - Static variable in class hdf.view.Tools
-
Key for BMP image file type.
- FILE_TYPE_GIF - Static variable in class hdf.view.Tools
-
Key for GIF image file type.
- FILE_TYPE_HDF4 - Static variable in class hdf.object.FileFormat
-
Key for HDF4 file format.
- FILE_TYPE_HDF5 - Static variable in class hdf.object.FileFormat
-
Key for HDF5 file format.
- FILE_TYPE_IMAGE - Static variable in class hdf.view.Tools
-
Key for all image file type.
- FILE_TYPE_JPEG - Static variable in class hdf.view.Tools
-
Key for JPEG image file type.
- FILE_TYPE_NC3 - Static variable in class hdf.object.FileFormat
-
Key for NetCDF file format.
- FILE_TYPE_PNG - Static variable in class hdf.view.Tools
-
Key for PNG image file type.
- FILE_TYPE_TIFF - Static variable in class hdf.view.Tools
-
Key for TIFF image file type.
- fileFormat - Variable in class hdf.object.HObject
-
The file which contains the object
- FileFormat - Class in hdf.object
-
FileFormat defines general interfaces for working with files whose data is organized according to a supported format.
- FileFormat(String) - Constructor for class hdf.object.FileFormat
-
Creates a new FileFormat instance with the given filename.
- fillValue - Variable in class hdf.object.ScalarDS
-
The fill value of the dataset.
- filters - Variable in class hdf.object.Dataset
-
The filters information.
- findDataDist(Object, int[], double[]) - Static method in class hdf.view.Tools
-
Finds the distribution of data values
- findMinMax(Object, double[], Object) - Static method in class hdf.view.Tools
-
Finds the min and max values of the data array
- findObject(FileFormat, long[]) - Static method in class hdf.object.FileFormat
-
Finds an object by its object ID
- findObject(FileFormat, String) - Static method in class hdf.object.FileFormat
-
Finds an object by the full path of the object (path+name)
- fromNative(long) - Method in class hdf.object.Datatype
-
Set datatype characteristics (class, size, byte order and sign) from a given datatype identifier.
- fullFileName - Variable in class hdf.object.FileFormat
-
The absolute pathname (path+name) of the file.
G
- get(String) - Method in class hdf.object.FileFormat
-
Gets the HObject with the specified path from the file.
- getAnimationIcon() - Static method in class hdf.view.ViewProperties
- getAppsIcon() - Static method in class hdf.view.ViewProperties
- getArrayDims() - Method in class hdf.object.Datatype
-
Returns the dimensions of an Array Datatype.
- getAudioIcon() - Static method in class hdf.view.ViewProperties
- getAutocontrastIcon() - Static method in class hdf.view.ViewProperties
- getBinaryDataFromFile(Object, String, ByteOrder) - Static method in class hdf.view.Tools
-
Reads data from a binary file into a buffer.
- getBlankIcon() - Static method in class hdf.view.ViewProperties
- getBrightIcon() - Static method in class hdf.view.ViewProperties
- getBytes(Object, double[], long, long, boolean, byte[]) - Static method in class hdf.view.Tools
-
Convert an array of raw data into array of a byte data.
- getBytes(Object, double[], long, long, boolean, List<Number>, boolean, byte[]) - Static method in class hdf.view.Tools
- getBytes(Object, double[], long, long, boolean, List<Number>, boolean, byte[], List<Integer>) - Static method in class hdf.view.Tools
-
Convert an array of raw data into array of a byte data.
- getBytes(Object, double[], long, long, boolean, List<Number>, byte[]) - Static method in class hdf.view.Tools
- getChartIcon() - Static method in class hdf.view.ViewProperties
- getChunkSize() - Method in class hdf.object.Dataset
-
Returns the array that contains the dimension sizes of the chunk of the dataset.
- getCompoundMemberNames() - Method in class hdf.object.Datatype
- getCompoundMemberTypes() - Method in class hdf.object.Datatype
- getCompression() - Method in interface hdf.object.DataFormat
-
Returns the string representation of compression information.
- getCompression() - Method in class hdf.object.Dataset
-
Returns the string representation of compression information.
- getConvertByteToString() - Method in class hdf.object.Dataset
-
Returns the flag that indicates if a byte array is converted to a string array.
- getCopyIcon() - Static method in class hdf.view.ViewProperties
- getCutIcon() - Static method in class hdf.view.ViewProperties
- getData() - Method in interface hdf.object.DataFormat
-
Retrieves the object's data from the file.
- getData() - Method in class hdf.object.Dataset
-
Returns the data buffer of the dataset in memory.
- getDataDelimiter() - Static method in class hdf.view.ViewProperties
- getDatasetIcon() - Static method in class hdf.view.ViewProperties
- getDatasetIconA() - Static method in class hdf.view.ViewProperties
- getDatatype() - Method in class hdf.object.Attribute
- getDatatype() - Method in interface hdf.object.DataFormat
-
Returns the datatype of the data object.
- getDatatype() - Method in class hdf.object.Dataset
- getDatatypeBase() - Method in class hdf.object.Datatype
-
Returns the base datatype for this datatype.
- getDatatypeClass() - Method in class hdf.object.Datatype
-
Returns the class of the datatype.
- getDatatypeIcon() - Static method in class hdf.view.ViewProperties
- getDatatypeIconA() - Static method in class hdf.view.ViewProperties
- getDatatypeOrder() - Method in class hdf.object.Datatype
-
Returns the byte order of the datatype.
- getDatatypeSign() - Method in class hdf.object.Datatype
-
Returns the sign (SIGN_NONE, SIGN_2) of an integer datatype.
- getDatatypeSize() - Method in class hdf.object.Datatype
-
Returns the size of the datatype in bytes.
- getDataView(HObject) - Method in class hdf.view.HDFView
- getDescription() - Method in class hdf.object.Datatype
-
Returns a short text description of this datatype.
- getDescription() - Method in class hdf.view.DefaultFileFilter
- getDimNames() - Method in class hdf.object.Dataset
-
Returns the array of strings that represent the dimension names.
- getDims() - Method in interface hdf.object.DataFormat
-
Returns the array that contains the dimension sizes of the data value of the data object.
- getDims() - Method in class hdf.object.Dataset
-
Returns the array that contains the dimension sizes of the dataset.
- getEarlyLib() - Static method in class hdf.view.ViewProperties
-
Returns value of default lib version for the earliest.
- getEnumMembers() - Method in class hdf.object.Datatype
-
Returns the Map<String,String> pairs of enum members for enum datatype.
- getEnumMembersAsString() - Method in class hdf.object.Datatype
-
Returns the HashMap pairs of enum members for enum datatype.
- getExtensions() - Method in class hdf.view.DefaultFileFilter
- getFID() - Method in class hdf.object.FileFormat
-
Returns file identifier of open file associated with this instance.
- getFID() - Method in class hdf.object.HObject
-
Returns the file identifier of of the file containing the object.
- getFile() - Method in class hdf.object.HObject
-
Returns the name of the file that contains this data object.
- getFilecloseIcon() - Static method in class hdf.view.ViewProperties
- getFileExtension() - Static method in class hdf.view.ViewProperties
- getFileExtensions() - Static method in class hdf.object.FileFormat
-
Returns a list of file extensions for all supported file formats.
- getFileFilter() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterBinary() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterBMP() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterGIF() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterHDF4() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterHDF5() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterJPEG() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterNetCDF3() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterPNG() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterText() - Static method in class hdf.view.DefaultFileFilter
- getFileFilterTIFF() - Static method in class hdf.view.DefaultFileFilter
- getFileFormat() - Method in class hdf.object.HObject
-
Returns the file that contains the object.
- getFileFormat(String) - Static method in class hdf.object.FileFormat
-
Returns the FileFormat with specified key from the list of supported formats.
- getFileFormatKeys() - Static method in class hdf.object.FileFormat
-
Returns an Enumeration of keys for all supported formats.
- getFileFormats() - Static method in class hdf.object.FileFormat
-
Returns an array of supported FileFormat instances.
- getFilenewIcon() - Static method in class hdf.view.ViewProperties
- getFileopenIcon() - Static method in class hdf.view.ViewProperties
- getFilePath() - Method in class hdf.object.FileFormat
-
Returns the absolute path for the file.
- getFilesaveIcon() - Static method in class hdf.view.ViewProperties
- getFillValue() - Method in class hdf.object.Attribute
- getFillValue() - Method in interface hdf.object.DataFormat
-
Returns the fill values for the data object.
- getFillValue() - Method in class hdf.object.ScalarDS
-
Returns the fill values for the dataset.
- getFilteredImageValues() - Method in class hdf.object.ScalarDS
-
Get a list of values that will be filtered out in an image.
- getFilters() - Method in class hdf.object.Dataset
-
Returns the string representation of filter information.
- getFirstIcon() - Static method in class hdf.view.ViewProperties
- getFoldercloseIcon() - Static method in class hdf.view.ViewProperties
- getFoldercloseIconA() - Static method in class hdf.view.ViewProperties
- getFolderopenIcon() - Static method in class hdf.view.ViewProperties
- getFolderopenIconA() - Static method in class hdf.view.ViewProperties
- getFontSize() - Static method in class hdf.view.ViewProperties
- getFontType() - Static method in class hdf.view.ViewProperties
- getFullName() - Method in class hdf.object.HObject
-
Returns the full name (group path + object name) of the object.
- getH4Icon() - Static method in class hdf.view.ViewProperties
- getH4IconR() - Static method in class hdf.view.ViewProperties
- getH4toH5() - Static method in class hdf.view.ViewProperties
- getH5Icon() - Static method in class hdf.view.ViewProperties
- getH5IconR() - Static method in class hdf.view.ViewProperties
- getHDF5UserBlock(String) - Static method in class hdf.view.Tools
-
Read HDF5 user block data into byte array.
- getHdfIcon() - Static method in class hdf.view.ViewProperties
- getHeight() - Method in interface hdf.object.DataFormat
-
Returns the dimension size of the vertical axis.
- getHeight() - Method in class hdf.object.Dataset
-
Returns the dimension size of the vertical axis.
- getHelpIcon() - Static method in class hdf.view.ViewProperties
- getHelpViewList() - Static method in class hdf.view.ViewProperties
- getHObject(String) - Static method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.get(String)
This static method, which as been deprecated, causes two problems:
- It can be very expensive if it is called many times or in a loop because each call to the method creates an instance of a file.
- Since the method does not return the instance of the file, the file cannot be closed directly and may be left open (memory leak). The only way to close the file is through the object returned by this method.
- getHObject(String, String) - Static method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.get(String)
This static method, which as been deprecated, causes two problems:
- It can be very expensive if it is called many times or in a loop because each call to the method creates an instance of a file.
- Since the method does not return the instance of the
file, the file cannot be closed directly and may be left open
(memory leak). The only way to close the file is through the
object returned by this method, for example:
Dataset dset = H5File.getObject("hdf5_test.h5", "/images/iceburg"); ... // close the file through dset dset.getFileFormat().close();
- getImageDataRange() - Method in class hdf.object.ScalarDS
-
Returns the (min, max) pair of image data range.
- getImageFileFilter() - Static method in class hdf.view.DefaultFileFilter
- getImageIcon() - Static method in class hdf.view.ViewProperties
- getImageIconA() - Static method in class hdf.view.ViewProperties
- getImageOrigin() - Static method in class hdf.view.ViewProperties
- getImageViewList() - Static method in class hdf.view.ViewProperties
- getIndexOrder() - Static method in class hdf.view.ViewProperties
- getIndexOrder(String) - Method in class hdf.object.FileFormat
- getIndexOrderValue(String) - Static method in class hdf.object.FileFormat
- getIndexType() - Static method in class hdf.view.ViewProperties
- getIndexType(String) - Method in class hdf.object.FileFormat
- getIndexTypeValue(String) - Static method in class hdf.object.FileFormat
- getInstance(String) - Static method in class hdf.object.FileFormat
-
Creates a FileFormat instance for the specified file.
- getInterlace() - Method in class hdf.object.ScalarDS
-
Returns the interlace mode of a true color image (RGB).
- getJavaObjectRuntimeClass(Object) - Static method in class hdf.object.Utils
-
Retrieves the Java Runtime Class of the given Object.
- getLargeHdfIcon() - Static method in class hdf.view.ViewProperties
- getLastIcon() - Static method in class hdf.view.ViewProperties
- getLateLib() - Static method in class hdf.view.ViewProperties
-
Returns value of default lib version for the latest.
- getLibBounds() - Method in class hdf.object.FileFormat
-
Gets the bounds of library versions
- getLibBoundsDescription() - Method in class hdf.object.FileFormat
- getLibversion() - Method in class hdf.object.FileFormat
-
Returns the version of the library for the implementing FileFormat class.
- getLinkIcon() - Static method in class hdf.view.ViewProperties
- getLinkTargetObjName() - Method in class hdf.object.HObject
-
Returns the name of the target object that is linked to.
- getListOfImageViews() - Static method in class hdf.view.HDFView
- getListOfMetaDataViews() - Static method in class hdf.view.HDFView
- getListOfPaletteViews() - Static method in class hdf.view.HDFView
- getListOfTableViews() - Static method in class hdf.view.HDFView
- getListOfTreeViews() - Static method in class hdf.view.HDFView
- getMaxDims() - Method in class hdf.object.Dataset
-
Returns the array that contains the max dimension sizes of the dataset.
- getMaxMembers() - Method in class hdf.object.FileFormat
-
Returns the maximum number of objects that can be loaded into memory.
- getMaxMembers() - Static method in class hdf.view.ViewProperties
-
Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
- getMaxRecentFiles() - Static method in class hdf.view.ViewProperties
- getMember(int) - Method in class hdf.object.Group
-
Get the HObject at the specified index in this Group's member list.
- getMemberCount() - Method in class hdf.object.Attribute
-
Returns the number of members of the compound attribute.
- getMemberCount() - Method in interface hdf.object.CompoundDataFormat
-
Returns the number of members of the compound data object.
- getMemberCount() - Method in class hdf.object.CompoundDS
-
Returns the number of members of the compound dataset.
- getMemberDims(int) - Method in class hdf.object.Attribute
-
Returns the dimension sizes of the i-th member.
- getMemberDims(int) - Method in interface hdf.object.CompoundDataFormat
-
Returns the dimension sizes of the i-th member.
- getMemberDims(int) - Method in class hdf.object.CompoundDS
-
Returns the dimension sizes of the i-th member.
- getMemberList() - Method in class hdf.object.Group
-
Returns the list of members of this group.
- getMemberNames() - Method in class hdf.object.Attribute
-
Returns the names of the members of the compound attribute.
- getMemberNames() - Method in interface hdf.object.CompoundDataFormat
-
Returns the names of the members of the compound data object.
- getMemberNames() - Method in class hdf.object.CompoundDS
-
Returns the names of the members of the compound dataset.
- getMemberOrders() - Method in class hdf.object.Attribute
-
Returns array containing the total number of elements of the members of the compound attribute.
- getMemberOrders() - Method in interface hdf.object.CompoundDataFormat
-
Returns array containing the total number of elements of the members of the compound data object.
- getMemberOrders() - Method in class hdf.object.CompoundDS
-
Returns array containing the total number of elements of the members of the compound dataset.
- getMemberTypes() - Method in class hdf.object.Attribute
-
Returns an array of datatype objects of compound members.
- getMemberTypes() - Method in interface hdf.object.CompoundDataFormat
-
Returns an array of datatype objects of the compound members.
- getMemberTypes() - Method in class hdf.object.CompoundDS
-
Returns an array of datatype objects of compound members.
- getMetadata() - Method in class hdf.object.Attribute
- getMetadata() - Method in class hdf.object.Datatype
- getMetadata() - Method in interface hdf.object.MetaDataContainer
-
Retrieves the object's metadata, such as attributes, from the file.
- getMetaDataViewList() - Static method in class hdf.view.ViewProperties
- getMRF() - Static method in class hdf.view.ViewProperties
- getName() - Method in class hdf.object.HObject
-
Returns the name of the object.
- getNC3Icon() - Static method in class hdf.view.ViewProperties
- getNC3IconR() - Static method in class hdf.view.ViewProperties
- getNextIcon() - Static method in class hdf.view.ViewProperties
- getNumberOfMembers() - Method in class hdf.object.FileFormat
-
Returns the number of objects in memory.
- getNumberOfMembersInFile() - Method in class hdf.object.Group
-
Returns the total number of members of this group in file.
- getOID() - Method in class hdf.object.HObject
-
Returns a cloned copy of the object identifier.
- getOriginalClass() - Method in interface hdf.object.DataFormat
-
Get runtime Class of the original data buffer if converted.
- getOriginalClass() - Method in class hdf.object.Dataset
-
Get Class of the original data buffer if converted.
- getPalette() - Method in class hdf.object.ScalarDS
-
Returns the palette of this scalar dataset or null if palette does not exist.
- getPaletteIcon() - Static method in class hdf.view.ViewProperties
- getPaletteList() - Static method in class hdf.view.ViewProperties
- getPaletteName(int) - Method in class hdf.object.ScalarDS
-
Get the name of a specific image palette from file.
- getPaletteRefs() - Method in class hdf.object.ScalarDS
-
Returns the byte array of palette refs.
- getPaletteViewList() - Static method in class hdf.view.ViewProperties
- getParent() - Method in class hdf.object.Group
- getParentObject() - Method in class hdf.object.Attribute
-
Returns the HObject to which this Attribute is currently "attached".
- getPasteIcon() - Static method in class hdf.view.ViewProperties
- getPath() - Method in class hdf.object.HObject
-
Returns the group path of the object.
- getPdfIcon() - Static method in class hdf.view.ViewProperties
- getPreviousIcon() - Static method in class hdf.view.ViewProperties
- getProperty(String) - Method in class hdf.object.Attribute
-
get a property for a given key.
- getPropertyFile() - Static method in class hdf.view.ViewProperties
- getPropertyKeys() - Method in class hdf.object.Attribute
-
get all property keys.
- getQuestionIcon() - Static method in class hdf.view.ViewProperties
- getRank() - Method in interface hdf.object.DataFormat
-
Returns the rank (number of dimensions) of the data object.
- getRank() - Method in class hdf.object.Dataset
-
Returns the rank (number of dimensions) of the dataset.
- getRootObject() - Method in class hdf.object.FileFormat
-
Returns the root object for the file associated with this instance.
- getSelectedDims() - Method in interface hdf.object.DataFormat
-
Returns the dimension sizes of the selected subset.
- getSelectedDims() - Method in class hdf.object.Dataset
-
Returns the dimension sizes of the selected subset.
- getSelectedIndex() - Method in interface hdf.object.DataFormat
-
Returns the indices of display order.
- getSelectedIndex() - Method in class hdf.object.Dataset
-
Returns the indices of display order.
- getSelectedMemberCount() - Method in class hdf.object.Attribute
-
Returns the number of selected members of the compound attribute.
- getSelectedMemberCount() - Method in interface hdf.object.CompoundDataFormat
-
Returns the number of selected members of the compound data object.
- getSelectedMemberCount() - Method in class hdf.object.CompoundDS
-
Returns the number of selected members of the compound dataset.
- getSelectedMemberNames() - Method in class hdf.object.Attribute
-
Returns an array of the names of the selected members of the compound dataset.
- getSelectedMemberNames() - Method in interface hdf.object.CompoundDataFormat
-
Returns an array of the names of the selected compound members.
- getSelectedMemberNames() - Method in class hdf.object.CompoundDS
-
Returns an array of the names of the selected members of the compound dataset.
- getSelectedMemberOrders() - Method in class hdf.object.Attribute
-
Returns array containing the total number of elements of the selected members of the compound attribute.
- getSelectedMemberOrders() - Method in interface hdf.object.CompoundDataFormat
-
Returns array containing the total number of elements of the selected members of the compound data object.
- getSelectedMemberOrders() - Method in class hdf.object.CompoundDS
-
Returns array containing the total number of elements of the selected members of the compound dataset.
- getSelectedMemberTypes() - Method in class hdf.object.Attribute
-
Returns an array of datatype objects of selected compound members.
- getSelectedMemberTypes() - Method in interface hdf.object.CompoundDataFormat
-
Returns an array of datatype objects of the selected compound members.
- getSelectedMemberTypes() - Method in class hdf.object.CompoundDS
-
Returns an array of datatype objects of selected compound members.
- getSize(long) - Method in class hdf.object.Dataset
-
Returns the size in bytes of a given datatype.
- getSrbAccount() - Static method in class hdf.view.ViewProperties
- getStartDims() - Method in interface hdf.object.DataFormat
-
Returns the starting position of a selected subset.
- getStartDims() - Method in class hdf.object.Dataset
-
Returns the starting position of a selected subset.
- getStartMembers() - Method in class hdf.object.FileFormat
-
Returns the index of the starting object to be loaded into memory.
- getStartMembers() - Static method in class hdf.view.ViewProperties
-
Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
- getStorage() - Method in class hdf.object.Dataset
-
Returns the string representation of storage information.
- getStorageLayout() - Method in class hdf.object.Dataset
-
Returns the string representation of storage layout information.
- getStride() - Method in interface hdf.object.DataFormat
-
Returns the selectedStride of the selected dataset.
- getStride() - Method in class hdf.object.Dataset
-
Returns the selectedStride of the selected dataset.
- getTableIcon() - Static method in class hdf.view.ViewProperties
- getTableIconA() - Static method in class hdf.view.ViewProperties
- getTableViewList() - Static method in class hdf.view.ViewProperties
- getTestState() - Method in class hdf.view.HDFView
- getTextIcon() - Static method in class hdf.view.ViewProperties
- getTextIconA() - Static method in class hdf.view.ViewProperties
- getTreeView() - Method in class hdf.view.HDFView
- getTreeViewList() - Static method in class hdf.view.ViewProperties
- getUrlBar() - Method in class hdf.view.HDFView
- getUrlIcon() - Static method in class hdf.view.ViewProperties
- getUsersGuide() - Static method in class hdf.view.ViewProperties
- getVideoIcon() - Static method in class hdf.view.ViewProperties
- getViewRoot() - Static method in class hdf.view.ViewProperties
- getVirtualFilename(int) - Method in class hdf.object.Dataset
- getVirtualMaps() - Method in class hdf.object.Dataset
- getWidth() - Method in interface hdf.object.DataFormat
-
Returns the dimension size of the horizontal axis.
- getWidth() - Method in class hdf.object.Dataset
-
Returns the dimension size of the horizontal axis.
- getWorkDir() - Static method in class hdf.view.ViewProperties
- getXlsIcon() - Static method in class hdf.view.ViewProperties
- getZoominIcon() - Static method in class hdf.view.ViewProperties
- getZoomoutIcon() - Static method in class hdf.view.ViewProperties
- Group - Class in hdf.object
-
Group is an abstract class.
- Group(FileFormat, String, String, Group) - Constructor for class hdf.object.Group
-
Constructs an instance of the group with specific name, path and parent group.
- Group(FileFormat, String, String, Group, long[]) - Constructor for class hdf.object.Group
-
Deprecated.Not for public use in the future.
UsingGroup(FileFormat, String, String, Group)
H
- hasAlpha(Image) - Static method in class hdf.view.Tools
-
This method returns true if the specified image has transparent pixels.
- hasAttribute() - Method in class hdf.object.Attribute
- hasAttribute() - Method in interface hdf.object.MetaDataContainer
-
Check if the object has any attributes attached.
- hashCode() - Method in class hdf.object.Attribute
- hashCode() - Method in class hdf.object.HObject
- hdf.object - package hdf.object
- hdf.view - package hdf.view
- HDFView - Class in hdf.view
-
HDFView is the main class of this HDF visual tool.
- HDFView(String) - Constructor for class hdf.view.HDFView
-
Constructs HDFView with a given root directory, where the HDFView is installed, and opens the given files in the viewer.
- HEXCHARS - Static variable in class hdf.view.Tools
- HISTOGRAM - Static variable in class hdf.view.Chart
-
histogram style chart
- HObject - Class in hdf.object
-
The HObject class is the root class of all the HDF data objects.
- HObject() - Constructor for class hdf.object.HObject
-
Constructs an instance of a data object without name and path.
- HObject(FileFormat, String, String) - Constructor for class hdf.object.HObject
-
Constructs an instance of a data object with specific name and path.
- HObject(FileFormat, String, String, long[]) - Constructor for class hdf.object.HObject
-
Deprecated.
I
- IMAGE - hdf.view.ViewProperties.DataViewType
- imageDataRange - Variable in class hdf.object.ScalarDS
-
The min-max range of image data values.
- INDEXBASE1 - hdf.view.ViewProperties.DATA_VIEW_KEY
- INFO - hdf.view.ViewProperties.DATA_VIEW_KEY
- init() - Method in class hdf.object.Attribute
- init() - Method in interface hdf.object.DataFormat
- inited - Variable in class hdf.object.Dataset
-
Flag to indicate if this dataset has been initialized
- interlace - Variable in class hdf.object.ScalarDS
-
The interlace mode of the stored raster image data.
- INTERLACE_LINE - Static variable in class hdf.object.ScalarDS
-
Indicates that each pixel component of RGB is stored as a scan line.
- INTERLACE_PIXEL - Static variable in class hdf.object.ScalarDS
-
Indicates that the pixel RGB values are contiguous.
- INTERLACE_PLANE - Static variable in class hdf.object.ScalarDS
-
Indicates that each pixel component of RGB is stored as a plane.
- isArray() - Method in class hdf.object.Datatype
-
Checks if this datatype is an array type.
- isAutoContrast() - Static method in class hdf.view.ViewProperties
-
Returns true if auto contrast is used in image processing.
- isBitField() - Method in class hdf.object.Datatype
-
Checks if this datatype is a bitfield type.
- isChar() - Method in class hdf.object.Datatype
-
Checks if this datatype is a character type.
- isCompound() - Method in class hdf.object.Datatype
-
Checks if this datatype is an compound type.
- isConvertEnum() - Static method in class hdf.view.ViewProperties
- isDataLoaded - Variable in class hdf.object.Dataset
-
Flag to indicate if data values are loaded into memory.
- isDefaultImageOrder - Variable in class hdf.object.ScalarDS
-
Flag to indicate if the dataset is displayed as an image with default order of dimensions.
- isDefaultImageOrder() - Method in class hdf.object.ScalarDS
-
Returns true if this dataset is displayed as an image with default image order.
- isEnum() - Method in class hdf.object.Datatype
-
Checks if this datatype is a enum type.
- isExtensionListInDescription() - Method in class hdf.view.DefaultFileFilter
- isFillValueConverted - Variable in class hdf.object.ScalarDS
-
Flag to indicate if the FillValue is converted from unsigned C.
- isFloat() - Method in class hdf.object.Datatype
-
Checks if this datatype is a floating-point type.
- isHDF4(String) - Static method in class hdf.view.Tools
-
look at the first 4 bytes of the file to see if it is an HDF4 file.
- isHDF5(String) - Static method in class hdf.view.Tools
-
look at the first 8 bytes of the file to see if it is an HDF5 file.
- isImage - Variable in class hdf.object.ScalarDS
-
True if this dataset is an image.
- isImage() - Method in class hdf.object.ScalarDS
-
Returns true if this dataset is an image.
- isImageDisplay - Variable in class hdf.object.ScalarDS
-
Flag to indicate if the dataset is displayed as an image.
- isImageDisplay() - Method in class hdf.object.ScalarDS
-
Returns true if this dataset is displayed as an image.
- isIndexBase1() - Static method in class hdf.view.ViewProperties
- isInited() - Method in interface hdf.object.DataFormat
- isInited() - Method in class hdf.object.Dataset
- isInteger() - Method in class hdf.object.Datatype
-
Checks if this datatype is an integer type.
- isMemberSelected - Variable in class hdf.object.Attribute
-
The array to store flags to indicate if a member of this compound attribute is selected for read/write.
- isMemberSelected - Variable in class hdf.object.CompoundDS
-
The array to store flags to indicate if a member of this compound dataset is selected for read/write.
- isMemberSelected(int) - Method in class hdf.object.Attribute
-
Checks if a member of the compound attribute is selected for read/write.
- isMemberSelected(int) - Method in interface hdf.object.CompoundDataFormat
-
Checks if a member of the compound data object is selected for read/write.
- isMemberSelected(int) - Method in class hdf.object.CompoundDS
-
Checks if a member of the compound dataset is selected for read/write.
- isNaNINF(double) - Static method in class hdf.view.Tools
-
Check if a given number if NaN or INF.
- isNetcdf(String) - Static method in class hdf.view.Tools
-
look at the first 4 bytes of the file to see if it is a netCDF file byte[0]=67, byte[1]=68, byte[2]=70, byte[3]=1 or
- isOpaque() - Method in class hdf.object.Datatype
-
Checks if this datatype is a opaque type.
- isReadOnly - Variable in class hdf.object.FileFormat
-
Flag indicating if the file access is read-only.
- isReadOnly() - Method in class hdf.object.FileFormat
-
Returns true if the file access is read-only.
- isReadOnly() - Static method in class hdf.view.ViewProperties
-
Returns true if default file access is read only.
- isRef() - Method in class hdf.object.Datatype
-
Checks if this datatype is a reference type.
- isRoot() - Method in class hdf.object.Group
-
Checks if it is a root group.
- isScalar - Variable in class hdf.object.Attribute
-
Flag to indicate if the attribute data is a single scalar point
- isScalar() - Method in class hdf.object.Attribute
- isString() - Method in class hdf.object.Datatype
-
Checks if this datatype is a string type.
- isString(long) - Method in class hdf.object.Dataset
-
Checks if a given datatype is a string.
- isText - Variable in class hdf.object.ScalarDS
-
True if this dataset is ASCII text.
- isText() - Method in class hdf.object.Datatype
- isThisType(FileFormat) - Method in class hdf.object.FileFormat
-
Checks if the class implements the specified FileFormat.
- isThisType(String) - Method in class hdf.object.FileFormat
-
Checks if the implementing FileFormat class matches the format of the specified file.
- isTrueColor - Variable in class hdf.object.ScalarDS
-
True if this dataset is a true color image.
- isTrueColor() - Method in class hdf.object.ScalarDS
- isUnsigned() - Method in class hdf.object.Datatype
-
Checks if this datatype is unsigned.
- isVariableStr - Variable in class hdf.object.Datatype
- isVarStr() - Method in class hdf.object.Datatype
-
Checks if this datatype is a variable-length string type.
- isVirtual() - Method in class hdf.object.Dataset
- isVLEN - Variable in class hdf.object.Datatype
-
Determines whether this datatype is a variable-length type.
- isVLEN() - Method in class hdf.object.Datatype
-
Checks if this datatype is a variable-length type.
L
- launchBrowser(String) - Static method in class hdf.view.Tools
-
Launch default browser for a given URL.
- LINE_COLORS - Static variable in class hdf.view.Chart
-
The default colors of lines for selected columns
- LINEPLOT - Static variable in class hdf.view.Chart
-
line style chart
- LINK_TYPE_EXTERNAL - Static variable in class hdf.object.Group
- LINK_TYPE_HARD - Static variable in class hdf.object.Group
- LINK_TYPE_SOFT - Static variable in class hdf.object.Group
- linkTargetObjName - Variable in class hdf.object.HObject
-
The name of the Target Object that is being linked to.
- load() - Method in class hdf.view.ViewProperties
-
Load user properties from property file
- loadExtClass() - Static method in class hdf.view.ViewProperties
-
load module classes
- loadIcons() - Static method in class hdf.view.ViewProperties
M
- main(String[]) - Static method in class hdf.view.HDFView
-
The starting point of this application.
- MAX_INT16 - Static variable in class hdf.view.Tools
- MAX_INT32 - Static variable in class hdf.view.Tools
- MAX_INT64 - Static variable in class hdf.view.Tools
- MAX_INT8 - Static variable in class hdf.view.Tools
- MAX_RECENT_FILES - Static variable in class hdf.view.ViewProperties
-
the maximum number of most recent files
- MAX_UINT16 - Static variable in class hdf.view.Tools
- MAX_UINT32 - Static variable in class hdf.view.Tools
- MAX_UINT64 - Static variable in class hdf.view.Tools
- MAX_UINT8 - Static variable in class hdf.view.Tools
- maxDims - Variable in class hdf.object.Dataset
-
The max dimension sizes of the dataset
- memberDims - Variable in class hdf.object.Attribute
-
The dimension sizes of each member.
- memberDims - Variable in class hdf.object.CompoundDS
-
The dimension sizes of each member.
- memberNames - Variable in class hdf.object.Attribute
-
The names of the members of the compound attribute.
- memberNames - Variable in class hdf.object.CompoundDS
-
The names of members of the compound dataset.
- memberOrders - Variable in class hdf.object.Attribute
-
Array containing the total number of elements of the members of this compound attribute.
- memberOrders - Variable in class hdf.object.CompoundDS
-
Returns array containing the total number of elements of the members of this compound dataset.
- memberTypes - Variable in class hdf.object.Attribute
-
The datatypes of the compound attribute's members.
- memberTypes - Variable in class hdf.object.CompoundDS
-
The datatypes of compound members.
- METADATA - hdf.view.ViewProperties.DataViewType
- MetaDataContainer - Interface in hdf.object
-
An interface that provides general I/O operations for object metadata attached to an object.
N
- NATIVE - Static variable in class hdf.object.Datatype
-
The default definition for datatype size, order, and sign.
- newInstance(Class<?>, Object[]) - Static method in class hdf.view.Tools
-
Create and initialize a new instance of the given class.
- nMembersInFile - Variable in class hdf.object.Group
-
Total number of members of this group in file.
- nPoints - Variable in class hdf.object.Dataset
-
The number of data points in the memory buffer.
- NSGN - Static variable in class hdf.object.Datatype
- numberOfMembers - Variable in class hdf.object.Attribute
-
The number of members of the compound attribute.
- numberOfMembers - Variable in class hdf.object.CompoundDS
-
The number of members of the compound dataset.
- numberOfPoints - Variable in class hdf.view.Chart
-
number of data points
O
- OBJECT - hdf.view.ViewProperties.DATA_VIEW_KEY
- oid - Variable in class hdf.object.HObject
-
Array of long integer storing unique identifier for the object.
- open() - Method in class hdf.object.Attribute
- open() - Method in class hdf.object.Datatype
-
Opens access to this named datatype.
- open() - Method in class hdf.object.FileFormat
-
Opens file and returns a file identifier.
- open() - Method in class hdf.object.HObject
-
Opens an existing object such as a dataset or group for access.
- open() - Method in class hdf.view.Chart
- open(int...) - Method in class hdf.object.FileFormat
-
Opens file and returns a file identifier.
- open(String, int) - Method in class hdf.object.FileFormat
-
Deprecated.As of 2.4, replaced by
FileFormat.createInstance(String, int)
The replacement method has identical functionality and a more descriptive name. Since open is used elsewhere to perform a different function this method has been deprecated. - OPEN_NEW - Static variable in class hdf.object.FileFormat
-
File first time access flag for open file.
- openMainWindow(List<File>, int, int, int, int) - Method in class hdf.view.HDFView
-
Creates HDFView with a given size, and opens the given files in the viewer.
- ORDER_BE - Static variable in class hdf.object.Datatype
- ORDER_LE - Static variable in class hdf.object.Datatype
- ORDER_NONE - Static variable in class hdf.object.Datatype
- ORDER_VAX - Static variable in class hdf.object.Datatype
- ORIGIN_LL - Static variable in class hdf.view.ViewProperties
-
image origin: LowerLeft
- ORIGIN_LR - Static variable in class hdf.view.ViewProperties
-
image origin: LowerRight
- ORIGIN_UL - Static variable in class hdf.view.ViewProperties
-
image origin: UpperLeft
- ORIGIN_UR - Static variable in class hdf.view.ViewProperties
-
image origin: UpperRight
- originalBuf - Variable in class hdf.object.Dataset
-
The data buffer that contains the raw data directly reading from file (before any data conversion).
P
- palette - Variable in class hdf.object.ScalarDS
-
The indexed RGB color model with 256 colors.
- PALETTE - hdf.view.ViewProperties.DataViewType
- parent - Variable in class hdf.object.Group
-
The parent group where this group is located.
- parentObject - Variable in class hdf.object.Attribute
-
The HObject to which this Attribute is attached
R
- rank - Variable in class hdf.object.Dataset
-
The number of dimensions of the dataset.
- read() - Method in class hdf.object.Attribute
- read() - Method in interface hdf.object.DataFormat
-
Reads the data from file.
- READ - Static variable in class hdf.object.FileFormat
-
File access flag for read-only permission.
- readBytes() - Method in class hdf.object.Attribute
- readBytes() - Method in class hdf.object.Dataset
-
Reads the raw data of the dataset from file to a byte array.
- READONLY - hdf.view.ViewProperties.DATA_VIEW_KEY
- readPalette(int) - Method in class hdf.object.ScalarDS
-
Reads a specific image palette from file.
- readPalette(String) - Static method in class hdf.view.Tools
-
read an image palette from a file.
- removeDataView(DataView) - Method in class hdf.view.HDFView
- removeFileFormat(String) - Static method in class hdf.object.FileFormat
-
Removes a FileFormat from the list of supported formats.
- removeFromMemberList(HObject) - Method in class hdf.object.Group
-
Removes an object from the member list of this group in memory.
- removeMetadata(Object) - Method in class hdf.object.Attribute
- removeMetadata(Object) - Method in class hdf.object.Datatype
- removeMetadata(Object) - Method in interface hdf.object.MetaDataContainer
-
Deletes an existing piece of metadata from this object.
- renameAttribute(HObject, String, String) - Method in class hdf.object.FileFormat
-
Renames an attribute.
- runMainWindow() - Method in class hdf.view.HDFView
S
- save() - Method in class hdf.view.ViewProperties
-
Save user properties into property file
- saveAsBinary(DataOutputStream, Object, ByteOrder) - Static method in class hdf.view.Tools
- saveImageAs(BufferedImage, File, String) - Static method in class hdf.view.Tools
-
Save a BufferedImage into an image file.
- ScalarDS - Class in hdf.object
-
A scalar dataset is a multiple dimension array of scalar points.
- ScalarDS(FileFormat, String, String) - Constructor for class hdf.object.ScalarDS
-
Constructs an instance of a ScalarDS with specific name and path.
- ScalarDS(FileFormat, String, String, long[]) - Constructor for class hdf.object.ScalarDS
-
Deprecated.Not for public use in the future.
UsingScalarDS(FileFormat, String, String)
- selectedDims - Variable in class hdf.object.Dataset
-
Array that contains the number of data points selected (for read/write) in each dimension.
- selectedIndex - Variable in class hdf.object.Dataset
-
Array that contains the indices of the dimensions selected for display.
- selectedStride - Variable in class hdf.object.Dataset
-
The number of elements to move from the start location in each dimension.
- selectMember(int) - Method in class hdf.object.Attribute
-
Selects the i-th member for read/write.
- selectMember(int) - Method in interface hdf.object.CompoundDataFormat
-
Selects the i-th member for read/write.
- selectMember(int) - Method in class hdf.object.CompoundDS
-
Selects the i-th member for read/write.
- SEPARATOR - Static variable in class hdf.object.CompoundDS
-
A single character to separate the names of nested compound fields.
- SEPARATOR - Static variable in class hdf.object.HObject
-
The separator of object path, i.e.
- setAllMemberSelection(boolean) - Method in class hdf.object.Attribute
-
Selects/deselects all members.
- setAllMemberSelection(boolean) - Method in interface hdf.object.CompoundDataFormat
-
Selects/deselects all members.
- setAllMemberSelection(boolean) - Method in class hdf.object.CompoundDS
-
Selects/deselects all members.
- setAutoContrast(boolean) - Static method in class hdf.view.ViewProperties
-
Set the flag to indicate if auto contrast is used in image process.
- setConvertByteToString(boolean) - Method in class hdf.object.Dataset
-
Sets the flag that indicates if a byte array is converted to a string array.
- setConvertEnum(boolean) - Static method in class hdf.view.ViewProperties
- setData(Object) - Method in interface hdf.object.DataFormat
- setData(Object) - Method in class hdf.object.Dataset
-
Not for public use in the future.
- setDataDelimiter(String) - Static method in class hdf.view.ViewProperties
-
set the delimiter of data values
- setDescription(String) - Method in class hdf.view.DefaultFileFilter
-
Sets the human readable description of this filter.
- setEarlyLib(String) - Static method in class hdf.view.ViewProperties
-
Set the value of default lib version for the earliest.
- setEnumMembers(String) - Method in class hdf.object.Datatype
-
Sets the (key, value) pairs of enum members for enum datatype.
- setExtensionListInDescription(boolean) - Method in class hdf.view.DefaultFileFilter
-
Determines whether the extension list (.jpg, .gif, etc) should show up in the human readable description.
- setFileExtension(String) - Static method in class hdf.view.ViewProperties
-
set the file extension
- setFontSize(int) - Static method in class hdf.view.ViewProperties
-
sets the font size
- setFontType(String) - Static method in class hdf.view.ViewProperties
-
sets the font type
- setH4toH5(String) - Static method in class hdf.view.ViewProperties
-
set the path of the H4 to H5 converter
- setHDF5UserBlock(String, String, byte[]) - Static method in class hdf.view.Tools
-
Write HDF5 user block data into byte array.
- setImageDataRange(double, double) - Method in class hdf.object.ScalarDS
-
Sets data range for an image.
- setImageOrigin(String) - Static method in class hdf.view.ViewProperties
-
set the image origin
- setIndexBase1(boolean) - Static method in class hdf.view.ViewProperties
-
Set the flag to indicate if IndexBase should start at 1.
- setIndexOrder(int) - Method in class hdf.object.FileFormat
- setIndexOrder(String) - Static method in class hdf.view.ViewProperties
-
set the index order
- setIndexType(int) - Method in class hdf.object.FileFormat
- setIndexType(String) - Static method in class hdf.view.ViewProperties
-
set the index type
- setIsImage(boolean) - Method in class hdf.object.ScalarDS
-
Sets the flag to indicate this dataset is an image.
- setIsImageDisplay(boolean) - Method in class hdf.object.ScalarDS
-
Sets the flag to display the dataset as an image.
- setLateLib(String) - Static method in class hdf.view.ViewProperties
-
Set the value of default lib version for the latest.
- setLibBounds(String, String) - Method in class hdf.object.FileFormat
-
Sets the bounds of library versions.
- setLineColors(int[]) - Method in class hdf.view.Chart
-
Sets the color of each line of a line plot
- setLineLabels(String[]) - Method in class hdf.view.Chart
-
Sets the labels of each line.
- setLinkTargetObjName(String) - Method in class hdf.object.HObject
-
Sets the name of the target object that is linked to.
- setMaxMembers(int) - Method in class hdf.object.FileFormat
-
Sets the maximum number of objects to be loaded into memory.
- setMaxMembers(int) - Static method in class hdf.view.ViewProperties
-
Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
- setName(String) - Method in class hdf.object.Group
-
Sets the name of the group.
- setName(String) - Method in class hdf.object.HObject
-
Sets the name of the object.
- setNewLibBounds(String, String) - Method in class hdf.object.FileFormat
-
Sets the bounds of new library versions.
- setPalette(byte[][]) - Method in class hdf.object.ScalarDS
-
Sets the palette for this dataset.
- setParentObject(HObject) - Method in class hdf.object.Attribute
-
Sets the HObject to which this Attribute is "attached".
- setPath(String) - Method in class hdf.object.HObject
-
Sets the path of the object.
- setProperty(String, Object) - Method in class hdf.object.Attribute
-
set a property for the attribute.
- setReadOnly(boolean) - Static method in class hdf.view.ViewProperties
-
Set the flag to indicate if default file access is read only.
- setRecentFiles(ArrayList<String>) - Static method in class hdf.view.ViewProperties
-
Sets the list of most recently accessed files.
- setRootDir(String) - Static method in class hdf.view.ViewProperties
-
set the path of the default root directory
- setShowImageValue(boolean) - Static method in class hdf.view.ViewProperties
-
Set the flag to indicate if "show image values" is set.
- setShowRegRefValue(boolean) - Static method in class hdf.view.ViewProperties
-
Set the flag to indicate if "show RegRef values" is set.
- setStartMembers(int) - Method in class hdf.object.FileFormat
-
Sets the starting index of objects to be loaded into memory.
- setStartMembers(int) - Static method in class hdf.view.ViewProperties
-
Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
- setTestState(boolean) - Method in class hdf.view.HDFView
-
Set the testing state that determines if HDFView is being executed for GUI testing.
- setTypeToInteger() - Method in class hdf.view.Chart
-
Sets the data type of the plot data to be integer.
- setUsersGuide(String) - Static method in class hdf.view.ViewProperties
-
set the path of H5View User's guide
- setWorkDir(String) - Static method in class hdf.view.ViewProperties
-
set the path of the default work directory
- showConfirm(Shell, String, String) - Static method in class hdf.view.Tools
-
Show an SWT Confirm dialog with the given message.
- showError(String) - Method in class hdf.view.HDFView
-
Display error message
- showError(Shell, String, String) - Static method in class hdf.view.Tools
-
Show an SWT error dialog with the given error message.
- showImageValues() - Static method in class hdf.view.ViewProperties
-
Returns true if "show image values" is set.
- showInformation(Shell, String, String) - Static method in class hdf.view.Tools
-
Show an SWT Information dialog with the given message.
- showMetaData(HObject) - Method in class hdf.view.HDFView
- showRegRefValues() - Static method in class hdf.view.ViewProperties
-
Returns true if "show regref values" is set.
- showStatus(String) - Method in class hdf.view.HDFView
-
Display feedback message.
- showWarning(Shell, String, String) - Static method in class hdf.view.Tools
-
Show an SWT Warning dialog with the given message.
- SIGN_2 - Static variable in class hdf.object.Datatype
- SIGN_NONE - Static variable in class hdf.object.Datatype
- startDims - Variable in class hdf.object.Dataset
-
The starting position of each dimension of a selected subset.
- storage - Variable in class hdf.object.Dataset
-
The storage information.
- storageLayout - Variable in class hdf.object.Dataset
-
The storage layout information.
- stringToByte(String[], int) - Static method in class hdf.object.Dataset
-
Converts a string array into an array of bytes for a fixed string dataset.
T
- TABLE - hdf.view.ViewProperties.DataViewType
- toBinaryString(long, int) - Static method in class hdf.view.Tools
-
Returns a string representation of the long argument as an unsigned integer in base 2.
- toBinaryString(BigInteger, int) - Static method in class hdf.view.Tools
- toBufferedImage(Image) - Static method in class hdf.view.Tools
-
This method returns a buffered image with the contents of an image.
- toHexString(long, int) - Static method in class hdf.view.Tools
-
Returns a string representation of the long argument as an unsigned integer in base 16.
- toHexString(BigInteger, int) - Static method in class hdf.view.Tools
-
Returns a string representation of the BigInteger argument as an unsigned integer in base 16.
- Tools - Class in hdf.view
-
The "Tools" class contains various tools for HDF files such as jpeg to HDF converter.
- Tools() - Constructor for class hdf.view.Tools
- toString() - Method in class hdf.object.Datatype
- toString() - Method in class hdf.object.HObject
-
Returns the name of the object.
- toString(String) - Method in class hdf.object.Attribute
-
Returns a string representation of the data value of the attribute.
- toString(String, int) - Method in class hdf.object.Attribute
-
Returns a string representation of the data value of the attribute.
- TRANSPOSED - hdf.view.ViewProperties.DATA_VIEW_KEY
- TREEVIEW - hdf.view.ViewProperties.DataViewType
U
- unsignedConverted - Variable in class hdf.object.Attribute
-
Flag to indicate is the original unsigned C data is converted.
- unsignedConverted - Variable in class hdf.object.ScalarDS
-
Flag to indicate is the original unsigned C data is converted.
- updateMetadata(Object) - Method in class hdf.object.Attribute
- updateMetadata(Object) - Method in class hdf.object.Datatype
- updateMetadata(Object) - Method in interface hdf.object.MetaDataContainer
-
Updates an existing piece of metadata attached to this object.
- Utils - Class in hdf.object
V
- valueOf(String) - Static method in enum hdf.view.ViewProperties.BITMASK_OP
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum hdf.view.ViewProperties.DATA_VIEW_KEY
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum hdf.view.ViewProperties.DataViewType
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum hdf.view.ViewProperties.BITMASK_OP
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum hdf.view.ViewProperties.DATA_VIEW_KEY
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum hdf.view.ViewProperties.DataViewType
-
Returns an array containing the constants of this enum type, in the order they are declared.
- VERSION - Static variable in class hdf.view.ViewProperties
-
the version of the HDFViewer
- VIEW_NAME - hdf.view.ViewProperties.DATA_VIEW_KEY
- ViewProperties - Class in hdf.view
- ViewProperties(String) - Constructor for class hdf.view.ViewProperties
-
Creates a property list with given root directory of the HDFView.
- ViewProperties.BITMASK_OP - Enum in hdf.view
-
Property keys control how the data is displayed.
- ViewProperties.DATA_VIEW_KEY - Enum in hdf.view
-
Property keys control how the data is displayed.
- ViewProperties.DataViewType - Enum in hdf.view
-
Used to create different DataViews for a given HObject.
W
- write() - Method in interface hdf.object.DataFormat
-
Writes the current memory buffer to the object in the file.
- write() - Method in class hdf.object.Dataset
-
Writes the memory buffer of this dataset to file.
- write(Object) - Method in class hdf.object.Attribute
- write(Object) - Method in interface hdf.object.DataFormat
-
Writes a memory buffer to the object in the file.
- WRITE - Static variable in class hdf.object.FileFormat
-
File access flag for read/write permission.
- writeAttribute(HObject, Attribute, boolean) - Method in class hdf.object.FileFormat
-
Attaches a given attribute to an object.
- writeDataToFile(FileFormat) - Method in class hdf.view.HDFView
-
Write the change of data to the given file.
- writeMetadata(Object) - Method in class hdf.object.Attribute
- writeMetadata(Object) - Method in class hdf.object.Datatype
- writeMetadata(Object) - Method in interface hdf.object.MetaDataContainer
-
Writes a specific piece of metadata (such as an attribute) into the file.
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