Serialized Form
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Package hdf.object
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Class hdf.object.Attribute extends Dataset implements Serializable
- serialVersionUID:
- 2072473407027648309L
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Serialized Fields
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flatNameList
List<String> flatNameList
A list of names of all compound fields including nested fields.The nested names are separated by CompoundDS.SEPARATOR. For example, if compound attribute "A" has the following nested structure,
A --> m01 A --> m02 A --> nest1 --> m11 A --> nest1 --> m12 A --> nest1 --> nest2 --> m21 A --> nest1 --> nest2 --> m22 i.e. A = { m01, m02, nest1{m11, m12, nest2{ m21, m22}}}
The flatNameList of compound attribute "A" will be {m01, m02, nest1[m11, nest1[m12, nest1[nest2[m21, nest1[nest2[m22} -
flatTypeList
List<Datatype> flatTypeList
A list of datatypes of all compound fields including nested fields. -
isMemberSelected
boolean[] isMemberSelected
The array to store flags to indicate if a member of this compound attribute is selected for read/write.If a member is selected, the read/write will perform on the member. Applications such as HDFView will only display the selected members of the compound attribute.
For example, if a compound attribute has four members String[] memberNames = {"X", "Y", "Z", "TIME"}; and boolean[] isMemberSelected = {true, false, false, true}; members "X" and "TIME" are selected for read and write.
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isScalar
boolean isScalar
Flag to indicate if the attribute data is a single scalar point -
memberNames
String[] memberNames
The names of the members of the compound attribute. -
memberOrders
int[] memberOrders
Array containing the total number of elements of the members of this compound attribute.For example, a compound attribute COMP has members of A, B and C as
COMP { int A; float B[5]; double C[2][3]; }
memberOrders is an integer array of {1, 5, 6} to indicate that member A has one element, member B has 5 elements, and member C has 6 elements. -
memberTypes
Datatype[] memberTypes
The datatypes of the compound attribute's members. -
numberOfMembers
int numberOfMembers
The number of members of the compound attribute. -
parentObject
HObject parentObject
The HObject to which this Attribute is attached -
unsignedConverted
boolean unsignedConverted
Flag to indicate is the original unsigned C data is converted.
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Class hdf.object.CompoundDS extends Dataset implements Serializable
- serialVersionUID:
- -4880399929644095662L
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Serialized Fields
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isMemberSelected
boolean[] isMemberSelected
The array to store flags to indicate if a member of this compound dataset is selected for read/write.If a member is selected, the read/write will perform on the member. Applications such as HDFView will only display the selected members of the compound dataset.
For example, if a compound dataset has four members String[] memberNames = {"X", "Y", "Z", "TIME"}; and boolean[] isMemberSelected = {true, false, false, true}; members "X" and "TIME" are selected for read and write.
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memberNames
String[] memberNames
The names of members of the compound dataset. -
memberOrders
int[] memberOrders
Returns array containing the total number of elements of the members of this compound dataset.For example, a compound dataset COMP has members of A, B and C as
COMP { int A; float B[5]; double C[2][3]; }
memberOrders is an integer array of {1, 5, 6} to indicate that member A has one element, member B has 5 elements, and member C has 6 elements. -
memberTypes
Datatype[] memberTypes
The datatypes of compound members. -
numberOfMembers
int numberOfMembers
The number of members of the compound dataset.
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Class hdf.object.Dataset extends HObject implements Serializable
- serialVersionUID:
- -3360885430038261178L
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Serialized Fields
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chunkSize
long[] chunkSize
The array of dimension sizes for a chunk. -
compression
StringBuilder compression
The compression information. -
convertByteToString
boolean convertByteToString
Flag to indicate if the byte[] array is converted to strings -
datatype
Datatype datatype
The datatype object of the dataset. -
dimNames
String[] dimNames
Array of strings that represent the dimension names. It is null if dimension names do not exist. -
dims
long[] dims
The current dimension sizes of the dataset -
filters
StringBuilder filters
The filters information. -
inited
boolean inited
Flag to indicate if this dataset has been initialized -
isDataLoaded
boolean isDataLoaded
Flag to indicate if data values are loaded into memory. -
maxDims
long[] maxDims
The max dimension sizes of the dataset -
nPoints
long nPoints
The number of data points in the memory buffer. -
rank
int rank
The number of dimensions of the dataset. -
selectedDims
long[] selectedDims
Array that contains the number of data points selected (for read/write) in each dimension.The selected size must be less than or equal to the current dimension size. A subset of a rectangle selection is defined by the starting position and selected sizes.
For example, if a 4 X 5 dataset is as follows:
0, 1, 2, 3, 4 10, 11, 12, 13, 14 20, 21, 22, 23, 24 30, 31, 32, 33, 34 long[] dims = {4, 5}; long[] startDims = {1, 2}; long[] selectedDims = {3, 3}; then the following subset is selected by the startDims and selectedDims above: 12, 13, 14 22, 23, 24 32, 33, 34
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selectedIndex
int[] selectedIndex
Array that contains the indices of the dimensions selected for display.selectedIndex[] is provided for two purposes:
- selectedIndex[] is used to indicate the order of dimensions for display, i.e. selectedIndex[0] = row, selectedIndex[1] = column and selectedIndex[2] = depth. For example, for a four dimension dataset, if selectedIndex[] is {1, 2, 3}, then dim[1] is selected as row index, dim[2] is selected as column index and dim[3] is selected as depth index.
- selectedIndex[] is also used to select dimensions for display for datasets with three or more dimensions. We assume that applications such as HDFView can only display data up to three dimensions (a 2D spreadsheet/image with a third dimension that the 2D spreadsheet/image is cut from). For datasets with more than three dimensions, we need selectedIndex[] to store which three dimensions are chosen for display. For example, for a four dimension dataset, if selectedIndex[] = {1, 2, 3}, then dim[1] is selected as row index, dim[2] is selected as column index and dim[3] is selected as depth index. dim[0] is not selected. Its location is fixed at 0 by default.
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selectedStride
long[] selectedStride
The number of elements to move from the start location in each dimension. For example, if selectedStride[0] = 2, every other data point is selected along dim[0]. -
startDims
long[] startDims
The starting position of each dimension of a selected subset. With both the starting position and selected sizes, the subset of a rectangle selection is fully defined. -
storage
StringBuilder storage
The storage information. -
storageLayout
StringBuilder storageLayout
The storage layout information.
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Class hdf.object.Datatype extends HObject implements Serializable
- serialVersionUID:
- -581324710549963177L
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Serialized Fields
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arrayDims
long[] arrayDims
The dimensions of the ARRAY element of an ARRAY datatype. -
baseType
Datatype baseType
The base datatype of this datatype (null if this datatype is atomic). -
compoundMemberNames
List<String> compoundMemberNames
The list of names of members of a compound Datatype. -
compoundMemberOffsets
List<Long> compoundMemberOffsets
The list of offsets of members of a compound Datatype. -
compoundMemberTypes
List<Datatype> compoundMemberTypes
The list of types of members of a compound Datatype. -
datatypeClass
int datatypeClass
The class of the datatype. -
datatypeDescription
String datatypeDescription
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datatypeOrder
int datatypeOrder
The byte order of the datatype. Valid values are ORDER_LE, ORDER_BE, and ORDER_VAX. -
datatypeSign
int datatypeSign
The sign of the datatype. -
datatypeSize
long datatypeSize
The size (in bytes) of the datatype. -
enumMembers
Map<String,String> enumMembers
The (name, value) pairs of enum members. -
isNamed
boolean isNamed
Determines whether this datatype is a named datatype -
isVariableStr
boolean isVariableStr
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isVLEN
boolean isVLEN
Determines whether this datatype is a variable-length type.
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Class hdf.object.FileFormat extends File implements Serializable
- serialVersionUID:
- -4700692313888420796L
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Serialized Fields
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fid
long fid
File identifier. -1 indicates the file is not open. -
fullFileName
String fullFileName
The absolute pathname (path+name) of the file. -
isReadOnly
boolean isReadOnly
Flag indicating if the file access is read-only. -
max_members
int max_members
Current Java applications, such as HDFView, cannot handle files with large numbers of objects due to JVM memory limitations. For example, 1,000,000 objects is too many. max_members is defined so that applications such as HDFView will load up to max_members objects starting with the start_members -th object. The implementing class has freedom in its interpretation of how to "count" objects in the file. -
start_members
int start_members
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Class hdf.object.Group extends HObject implements Serializable
- serialVersionUID:
- 3913174542591568052L
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Serialized Fields
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Class hdf.object.HObject extends Object implements Serializable
- serialVersionUID:
- -1723666708199882519L
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Serialized Fields
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fileFormat
FileFormat fileFormat
The file which contains the object -
filename
String filename
The full path of the file that contains the object. -
fullName
String fullName
The full name of the data object, i.e. "path + name" -
linkTargetObjName
String linkTargetObjName
The name of the Target Object that is being linked to. -
name
String name
The name of the data object. The root group has its default name, a slash. The name can be changed except the root group. -
oid
long[] oid
Array of long integer storing unique identifier for the object.HDF4 objects are uniquely identified by a (tag_id, ref_id) pair. i.e. oid[0] = tag, oid[1] = ref_id.
HDF5 objects are uniquely identified by an object reference. i.e. oid[0] = obj_id. -
path
String path
The full path of the data object. The full path always starts with the root, a slash. The path cannot be changed. Also, a path must be ended with a slash. For example, /arrays/ints/
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Class hdf.object.ScalarDS extends Dataset implements Serializable
- serialVersionUID:
- 8925371455928203981L
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Serialized Fields
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fillValue
Object fillValue
The fill value of the dataset. -
filteredImageValues
List<Number> filteredImageValues
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imageDataRange
double[] imageDataRange
The min-max range of image data values. For example, [0, 255] indicates the min is 0, and the max is 255. -
interlace
int interlace
The interlace mode of the stored raster image data. Valid values are INTERLACE_PIXEL, INTERLACE_LINE and INTERLACE_PLANE. -
isDefaultImageOrder
boolean isDefaultImageOrder
Flag to indicate if the dataset is displayed as an image with default order of dimensions. -
isFillValueConverted
boolean isFillValueConverted
Flag to indicate if the FillValue is converted from unsigned C. -
isImage
boolean isImage
True if this dataset is an image. -
isImageDisplay
boolean isImageDisplay
Flag to indicate if the dataset is displayed as an image. -
isText
boolean isText
True if this dataset is ASCII text. -
isTrueColor
boolean isTrueColor
True if this dataset is a true color image. -
palette
byte[][] palette
The indexed RGB color model with 256 colors.The palette values are stored in a two-dimensional byte array and arrange by color components of red, green and blue. palette[][] = byte[3][256], where, palette[0][], palette[1][] and palette[2][] are the red, green and blue components respectively.
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unsignedConverted
boolean unsignedConverted
Flag to indicate is the original unsigned C data is converted.
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Package hdf.object.fits
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Class hdf.object.fits.FitsDataset extends ScalarDS implements Serializable
- serialVersionUID:
- 3944770379558335171L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
nativeDataset
nom.tam.fits.BasicHDU nativeDataset
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Class hdf.object.fits.FitsDatatype extends Datatype implements Serializable
- serialVersionUID:
- 6545936196104493765L
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Serialized Fields
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nativeType
long nativeType
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Class hdf.object.fits.FitsFile extends FileFormat implements Serializable
- serialVersionUID:
- -1965689032980605791L
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Serialized Fields
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fitsFile
nom.tam.fits.Fits fitsFile
the fits file -
rootObject
HObject rootObject
The root object of the file hierarchy.
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Class hdf.object.fits.FitsGroup extends Group implements Serializable
- serialVersionUID:
- 4993155577664991838L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.
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Package hdf.object.h4
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Class hdf.object.h4.H4Attribute extends Attribute implements Serializable
- serialVersionUID:
- 2072473407027648309L
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Class hdf.object.h4.H4Datatype extends Datatype implements Serializable
- serialVersionUID:
- -1342029403385521874L
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Class hdf.object.h4.H4File extends FileFormat implements Serializable
- serialVersionUID:
- 8985533001471224030L
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Serialized Fields
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flag
int flag
the file access flag. -
grid
long grid
The GR interface identifier. The identifier is returned by GRstart(fid), which initializes the GR interface for the file specified by the parameter. GRstart(fid) is an expensive call. It should be called only once. Calling GRstart(fid) in a loop should be avoided. -
isNetCDF
boolean isNetCDF
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objList
List objList
The list of unique (tag, ref) pairs. It is used to avoid duplicate objects in memory. -
rootObject
HObject rootObject
The root object of this file. -
sdid
long sdid
The SDS interface identifier. The identifier is returned by SDstart(fname, flag), which initializes the SD interface for the file specified by the parameter. SDstart(fname, flag) is an expensive call. It should be called only once. Calling SDstart(fname, flag) in a loop should be avoided. -
showAll
boolean showAll
secret flag: show CDF0.0, etc., to help debug
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Class hdf.object.h4.H4GRImage extends ScalarDS implements Serializable
- serialVersionUID:
- 1029672744963360976L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
datatypeID
long datatypeID
the datatype identifier -
grid
long grid
The GR interface identifier obtained from GRstart(fid) -
nAttributes
int nAttributes
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ncomp
int ncomp
The number of components in the raster image
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Class hdf.object.h4.H4Group extends Group implements Serializable
- serialVersionUID:
- 3785240955078867900L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
nAttributes
int nAttributes
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Class hdf.object.h4.H4SDS extends ScalarDS implements Serializable
- serialVersionUID:
- 2557157923292438696L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
datatypeID
long datatypeID
the datatype identifier -
nAttributes
int nAttributes
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sdid
long sdid
The SDS interface identifier obtained from SDstart(filename, access)
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Class hdf.object.h4.H4Vdata extends CompoundDS implements Serializable
- serialVersionUID:
- -5978700886955419959L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
memberTIDs
long[] memberTIDs
The data types of the members of the compound dataset. -
nAttributes
int nAttributes
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numberOfRecords
int numberOfRecords
Number of records of this Vdata table.
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Package hdf.object.h5
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Class hdf.object.h5.H5Attribute extends Attribute implements Serializable
- serialVersionUID:
- 2072473407027648309L
-
Class hdf.object.h5.H5CompoundDS extends CompoundDS implements Serializable
- serialVersionUID:
- -5968625125574032736L
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Serialized Fields
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attributeList
List<Attribute> attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
flatNameList
List<String> flatNameList
A list of names of all fields including nested fields.The nested names are separated by CompoundDS.SEPARATOR. For example, if compound dataset "A" has the following nested structure,
A --> m01 A --> m02 A --> nest1 --> m11 A --> nest1 --> m12 A --> nest1 --> nest2 --> m21 A --> nest1 --> nest2 --> m22 i.e. A = { m01, m02, nest1{m11, m12, nest2{ m21, m22}}}
The flatNameList of compound dataset "A" will be {m01, m02, nest1[m11, nest1[m12, nest1[nest2[m21, nest1[nest2[m22} -
flatTypeList
List<Datatype> flatTypeList
A list of datatypes of all fields including nested fields. -
isExternal
boolean isExternal
flag to indicate if the dataset is an external dataset -
isVirtual
boolean isVirtual
flag to indicate if the dataset is a virtual dataset -
nAttributes
int nAttributes
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objInfo
hdf.hdf5lib.structs.H5O_info_t objInfo
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virtualNameList
List<String> virtualNameList
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Class hdf.object.h5.H5Datatype extends Datatype implements Serializable
- serialVersionUID:
- -750546422258749792L
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Serialized Fields
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attributeList
List<Attribute> attributeList
The list of attributes of this data object. -
isRefObj
boolean isRefObj
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isRegRef
boolean isRegRef
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nativeClass
int nativeClass
The native class of the datatype. -
nativeFPebias
long nativeFPebias
The native properties of the float datatype. -
nativeFPepos
long nativeFPepos
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nativeFPesize
long nativeFPesize
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nativeFPinpad
int nativeFPinpad
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nativeFPmpos
long nativeFPmpos
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nativeFPmsize
long nativeFPmsize
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nativeFPnorm
int nativeFPnorm
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nativeFPspos
long nativeFPspos
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nativeOffset
int nativeOffset
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nativePadLSB
int nativePadLSB
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nativePadMSB
int nativePadMSB
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nativePrecision
long nativePrecision
The native properties of the number datatype. -
nativeStrCSET
int nativeStrCSET
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nativeStrPad
int nativeStrPad
The native properties of the string datatype. -
nAttributes
int nAttributes
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objInfo
hdf.hdf5lib.structs.H5O_info_t objInfo
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opaqueTag
String opaqueTag
The tag for an opaque datatype.
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Class hdf.object.h5.H5File extends FileFormat implements Serializable
- serialVersionUID:
- 6247335559471526045L
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Serialized Fields
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flag
int flag
the file access flag. Valid values are HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5F_ACC_RDWR and HDF5Constants.H5F_ACC_CREAT. -
indexOrder
int indexOrder
The index order. Valid values are HDF5Constants.H5_ITER_INC, HDF5Constants.H5_ITER_DEC. -
indexType
int indexType
The index type. Valid values are HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_INDEX_CRT_ORDER. -
libver
int[] libver
The library version bounds -
rootObject
HObject rootObject
The root object of the file hierarchy.
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Class hdf.object.h5.H5Group extends Group implements Serializable
- serialVersionUID:
- -951164512330444150L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
nAttributes
int nAttributes
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obj_info
hdf.hdf5lib.structs.H5O_info_t obj_info
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Class hdf.object.h5.H5Link extends HObject implements Serializable
- serialVersionUID:
- -8137277460521594367L
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Serialized Fields
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obj_info
hdf.hdf5lib.structs.H5O_info_t obj_info
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Class hdf.object.h5.H5ScalarDS extends ScalarDS implements Serializable
- serialVersionUID:
- 2887517608230611642L
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Serialized Fields
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attributeList
List<Attribute> attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
isExternal
boolean isExternal
flag to indicate if the dataset is an external dataset -
isNativeDatatype
boolean isNativeDatatype
flag to indicate if the datatype in file is the same as dataype in memory -
isVirtual
boolean isVirtual
flag to indicate is the dataset is a virtual dataset -
nAttributes
int nAttributes
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objInfo
hdf.hdf5lib.structs.H5O_info_t objInfo
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paletteRefs
byte[] paletteRefs
The byte array containing references of palettes. Each reference requires eight bytes storage. Therefore, the array length is 8*numberOfPalettes. -
virtualNameList
List<String> virtualNameList
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Package hdf.object.nc2
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Class hdf.object.nc2.NC2Attribute extends Attribute implements Serializable
- serialVersionUID:
- 2072473407027648309L
-
Class hdf.object.nc2.NC2Dataset extends ScalarDS implements Serializable
- serialVersionUID:
- -6031051694304457461L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
nativeDataset
ucar.nc2.Variable nativeDataset
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Class hdf.object.nc2.NC2Datatype extends Datatype implements Serializable
- serialVersionUID:
- 5399364372073889764L
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Serialized Fields
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nativeType
ucar.ma2.DataType nativeType
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Class hdf.object.nc2.NC2File extends FileFormat implements Serializable
- serialVersionUID:
- 6941235662108358451L
-
Class hdf.object.nc2.NC2Group extends Group implements Serializable
- serialVersionUID:
- -1261533010442193447L
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Serialized Fields
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attributeList
List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute. -
netcdfAttributeList
List netcdfAttributeList
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netcdfDimensionList
List netcdfDimensionList
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netCDFGroup
ucar.nc2.Group netCDFGroup
The corresponding netcdf Group for this group. -
netcdfTypedefList
List netcdfTypedefList
The list of netcdf typedefs, dimensions and attributes of this data object. Members of the list are instance of ucar.nc2.*.
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-